Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11m24
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ...    91   2e-19
SPBC36.10 |||mitochondrial intermembrane space protein sorting p...    77   2e-15
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    32   0.079
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    25   6.9  

>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
 Frame = +1

Query: 280 MTRYFENTSVFNFSWDQVARGYWRRYPNPQSTHVLSEDTWSRQVRD-GCLYTKRLLTKTN 456
           MT    + +  N SW+ V+  +  RYPNP S HV+S D   R V D G LYT+RLL K  
Sbjct: 1   MTAICTDKTELNASWNTVSSAWLTRYPNPYSLHVVSADVLERYVDDEGRLYTERLLVKQG 60

Query: 457 RVPKWGERFFNSKSVKIIEESVVDPEKKILVTYTRNLGYTKVMSVVE 597
           R+P+W     N     I+E SV+DP K+ L + T NL + K++ V+E
Sbjct: 61  RLPRWASDLLNVNKSYILERSVIDPSKQELKSETFNLDHVKILRVIE 107


>SPBC36.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 39/110 (35%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
 Frame = +1

Query: 286 RYFENTSVFNFSWDQVARGYWRRYPNPQSTHVLSEDTWSRQVRD-GCLYTKRLLTKTNRV 462
           + FE+  +F + ++QV+  +W++YPN  +THV++ DT  R+V D G LYT+RL+T    +
Sbjct: 2   KIFESCHLFQYPFEQVSAAHWQKYPNEHATHVIAVDTLDRKVLDNGVLYTERLITCHQAL 61

Query: 463 PKWGERFFN-SKSVKIIEESVVDPEKKILVTYTRNLGYTKVMSVVERVEY 609
           P+W  +  + ++   I E S VD + + L   T NL ++  + V E V Y
Sbjct: 62  PRWILKLIDGAQDCYIRETSYVDLKARTLTLLTSNLTFSDRLRVDETVTY 111


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 31.9 bits (69), Expect = 0.079
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 484 KIFHPILELCWF*SGAALYKDNRRELVGSMYLQIGREYSAD 362
           KI HP    C    G  +YKD++ +L G +YL++  E+  D
Sbjct: 308 KILHP--GDCLIIPGEGMYKDSKTDLRGDLYLEVDIEFPKD 346


>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 360

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 265 FNAFYFNYIWSSFQNRRKTSYLFNTS 188
           F+ +Y+N I S FQN +K  Y+   S
Sbjct: 317 FSDYYYNGIPSYFQNPQKARYMLMLS 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,380
Number of Sequences: 5004
Number of extensions: 54115
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)