Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11m24
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical pr...    97   9e-21
Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical pr...    61   7e-10
AF016451-10|AAB66006.2|  259|Caenorhabditis elegans Hypothetical...    35   0.056
Z47357-3|CAA87422.1|  360|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U40802-3|AAM81105.1|  369|Caenorhabditis elegans Dense body prot...    28   6.4  
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot...    28   6.4  
U40802-1|AAM81106.1|  999|Caenorhabditis elegans Dense body prot...    28   6.4  
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele...    28   6.4  
AL023835-15|CAA19492.2|  520|Caenorhabditis elegans Hypothetical...    28   6.4  
AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3...    28   6.4  
Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like ...    27   8.4  

>Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical
           protein B0334.4 protein.
          Length = 210

 Score = 97.1 bits (231), Expect = 9e-21
 Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 5/116 (4%)
 Frame = +1

Query: 298 NTSVFNFSWDQVARGYWRRYPNPQSTHVLSEDTWSRQVRDGCLYTKRLLTK-----TNRV 462
           NTS F +S+D+VA  +W RYPN  + H++SED   RQ+ D  + TK+L+ K       RV
Sbjct: 8   NTS-FPYSFDEVASAFWDRYPNSHAKHIISEDVLERQITDNTIVTKKLIVKQGSSILKRV 66

Query: 463 PKWGERFFNSKSVKIIEESVVDPEKKILVTYTRNLGYTKVMSVVERVEYRSAGPGQ 630
           P+W  R  + + V +IEESV D   K LVTYTRN+ +  +  + ER  Y+S+   Q
Sbjct: 67  PRWISRMTDIQVVPVIEESVYDKVSKKLVTYTRNVSHISLFQLHERCIYKSSEDNQ 122


>Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical
           protein F15D3.6 protein.
          Length = 209

 Score = 60.9 bits (141), Expect = 7e-10
 Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
 Frame = +1

Query: 286 RYFENTSVFNFSWDQVARGYWRRYPNPQSTHVLSEDTWSRQVRDGCLYTKRLLTKTNRVP 465
           R + +  +F+  W+ VA+  +R+YPNP +  +   D   + +  G + T+R++     +P
Sbjct: 2   RIWSSEHIFDHEWETVAQAAFRKYPNPLNRSITGIDVVKQTLEAGKILTERIIQSHFSIP 61

Query: 466 KWGERFFNSKSVKIIEE-SVVDPEKKILVTYTRNLGYTKVMSVVERVEYRSA 618
            W  +       +   E +V+DP +K     TRNL  +  + V E++ Y  A
Sbjct: 62  SWATKLTGFSGTQYSHEYTVIDPTRKEFSLTTRNLNGSSFLRVDEKLTYTPA 113


>AF016451-10|AAB66006.2|  259|Caenorhabditis elegans Hypothetical
           protein C03A7.12 protein.
          Length = 259

 Score = 34.7 bits (76), Expect = 0.056
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -1

Query: 363 IWVSPPVTTRNLIPTEVKDRSIFEISRHF--TV*TSMLFTSIIFGLHSKTEGKRLIFSIH 190
           +W+     T NL+   V    I  + R F  TV T     S + G + +TE  R IFS+ 
Sbjct: 20  LWMGISADTVNLLQPRVFKFQILTVLRFFFSTVPTQSAILSFLSGGNRRTENARAIFSVS 79

Query: 189 LNAGFFLRNLIR 154
           +N   + R  +R
Sbjct: 80  INFPVYPRYAVR 91


>Z47357-3|CAA87422.1|  360|Caenorhabditis elegans Hypothetical
           protein ZK1128.3 protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +1

Query: 283 TRYFENTSVFNFSWDQVARGYWRRYPN-PQSTHVLSEDTWSRQVRDGCLYTKRLLTKTNR 459
           TR FE  SV NF   ++ R YW   P+ P+ ++ +   TW+  + DGCL +  LL   N+
Sbjct: 166 TRSFEMESVENFQSHRMRRVYWN--PSIPKDSNSMFR-TWNHFL-DGCLLS-LLLVPLNK 220

Query: 460 V 462
           +
Sbjct: 221 L 221


>U40802-3|AAM81105.1|  369|Caenorhabditis elegans Dense body protein
           1, isoform b protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 325 DQVARGYWRRYPNPQSTH 378
           ++  R +W RYP PQ++H
Sbjct: 171 EEETRAFWERYPLPQASH 188


>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
           1, isoform a protein.
          Length = 1010

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 325 DQVARGYWRRYPNPQSTH 378
           ++  R +W RYP PQ++H
Sbjct: 812 EEETRAFWERYPLPQASH 829


>U40802-1|AAM81106.1|  999|Caenorhabditis elegans Dense body protein
           1, isoform c protein.
          Length = 999

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 325 DQVARGYWRRYPNPQSTH 378
           ++  R +W RYP PQ++H
Sbjct: 812 EEETRAFWERYPLPQASH 829


>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
           C.elegans vinculin (deb-1) gene, complete cds. ).
          Length = 1010

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 325 DQVARGYWRRYPNPQSTH 378
           ++  R +W RYP PQ++H
Sbjct: 812 EEETRAFWERYPLPQASH 829


>AL023835-15|CAA19492.2|  520|Caenorhabditis elegans Hypothetical
           protein Y37A1B.9 protein.
          Length = 520

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -3

Query: 298 FRNISSFYCLDFN-AFYFNYIWSSFQNRRKTSY 203
           FRNI + YC DFN     NY +  FQ      Y
Sbjct: 319 FRNIQATYCQDFNETLDANYGFCQFQTLSNLGY 351


>AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3
           protein.
          Length = 689

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 546 ENLLFRINDTLLDYFNGFRVEKSFTPFWNSVGFSQEPLC-IKTTV 415
           E+L   + D  LDYFNG    +   P + ++    + +C +K TV
Sbjct: 284 EDLELSLTDEQLDYFNGNLQREMTGPIYETISILFKSICNLKVTV 328


>Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical
           protein T01G1.1c protein.
          Length = 1580

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 600 SLNYTHHFSVP*ISGVCYENLLFRINDTLLDYFN 499
           S  Y H F +P +  V YE+ + ++ D L D +N
Sbjct: 44  SFTYDHVFDMPTLQYVVYESCVEKLVDGLFDGYN 77


>Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical
           protein T01G1.1a protein.
          Length = 1605

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 600 SLNYTHHFSVP*ISGVCYENLLFRINDTLLDYFN 499
           S  Y H F +P +  V YE+ + ++ D L D +N
Sbjct: 44  SFTYDHVFDMPTLQYVVYESCVEKLVDGLFDGYN 77


>Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical
           protein T01G1.1c protein.
          Length = 1580

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 600 SLNYTHHFSVP*ISGVCYENLLFRINDTLLDYFN 499
           S  Y H F +P +  V YE+ + ++ D L D +N
Sbjct: 44  SFTYDHVFDMPTLQYVVYESCVEKLVDGLFDGYN 77


>Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical
           protein T01G1.1a protein.
          Length = 1605

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 600 SLNYTHHFSVP*ISGVCYENLLFRINDTLLDYFN 499
           S  Y H F +P +  V YE+ + ++ D L D +N
Sbjct: 44  SFTYDHVFDMPTLQYVVYESCVEKLVDGLFDGYN 77


>AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like
           protein KLP-12 protein.
          Length = 1609

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 600 SLNYTHHFSVP*ISGVCYENLLFRINDTLLDYFN 499
           S  Y H F +P +  V YE+ + ++ D L D +N
Sbjct: 48  SFTYDHVFDMPTLQYVVYESCVEKLVDGLFDGYN 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,150,224
Number of Sequences: 27780
Number of extensions: 286157
Number of successful extensions: 675
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)