Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11m23
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 32 0.073
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 31 0.097
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 29 0.52
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 29 0.52
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 29 0.68
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 29 0.68
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 27 1.6
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 27 2.1
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 2.1
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 2.1
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 27 2.7
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 26 3.6
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 26 3.6
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 4.8
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 26 4.8
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 25 6.3
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 25 6.3
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 25 8.4
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 31.9 bits (69), Expect = 0.073
Identities = 24/83 (28%), Positives = 44/83 (53%)
Frame = +2
Query: 200 YSNIIETKSALDDTTQRLESTRTSLDAARRELNDLQRNSAELQRRRTLQTKLEDERNMLQ 379
Y N E ++ L + R+E ++A+ L+ N+A L +L+ + DE++ LQ
Sbjct: 751 YGNY-ELETKLIEMHDRVEMQTNVIEASASALD--VSNTAILSFEDSLRRE-RDEKSTLQ 806
Query: 380 GECERLRDEVQRLRIEMVNEEKR 448
+C L+ E + +RIE+ N + R
Sbjct: 807 QKCLNLQYEYENVRIELENLQSR 829
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 31.5 bits (68), Expect = 0.097
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +2
Query: 203 SNIIETKSALDDTTQRLESTRTSLDAARRELNDLQRNS--AELQRRRTLQTKLEDERNML 376
SN+I +S LE+T+ + A R+E + S A + R L L++ER
Sbjct: 338 SNLITLQSRYSQALSELETTKRAFAALRKEKSKKTNYSVGAYNEDRNVLSNMLDNERR-- 395
Query: 377 QGECERLRDEVQRLRIEM 430
E E L E++ LR+++
Sbjct: 396 --EKEALLQELESLRVQL 411
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 29.1 bits (62), Expect = 0.52
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Frame = +2
Query: 290 ELNDLQRNSAELQRRRTLQTKLEDER--------NMLQGECERLRDEVQRLRIEMVNEEK 445
E N ++++ E QR + + +LE ER ++ E +RL+DE +R + E++ +EK
Sbjct: 87 EQNLIEQSITESQRIFSEKQRLEQERFNRELLEKKRIEAERQRLKDEEERRKKELMEKEK 146
Query: 446 R 448
+
Sbjct: 147 K 147
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 29.1 bits (62), Expect = 0.52
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Frame = +2
Query: 245 QRLESTRTSLDAAR--RELNDLQRNSAEL-----QRRRTLQTKLEDERNMLQGECERLRD 403
++++ +L+ R RE+NDLQ +AE+ ++ T+ K E E L+ E +RL
Sbjct: 704 RQVQEAEDALERERLFREINDLQIQNAEMKEQVYEKESTISQK-EVEITSLRNEKDRLST 762
Query: 404 EVQRLRIEMVNEEK 445
+Q++ +E+ + +
Sbjct: 763 RLQQVLLELEKQHE 776
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 28.7 bits (61), Expect = 0.68
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Frame = +2
Query: 215 ETKSALDDTTQRLES---TRTSLDAARRELNDLQRNSAELQRRRTLQTKLEDERN--MLQ 379
E DD Q+ ES T T LDA R++L + S + + K +ERN M Q
Sbjct: 129 ERLQQFDDDIQKRESLLETYTLLDAQRKDLEEKVLLSQDRKLESEAIIKQNEERNEEMFQ 188
Query: 380 G------ECERLRDEVQRLRIE 427
C ++R E R+R+E
Sbjct: 189 SLIEDKRLCSQVRTEYDRIRME 210
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 28.7 bits (61), Expect = 0.68
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 290 ELNDLQRNSAELQRRRTLQTKLEDERNMLQGECERLRDEVQRLRIEMVNEEK-RW 451
E+N+ +RN + LQ +R L + +D + L +VQ + ++ VN+ K +W
Sbjct: 1424 EINERKRNESMLQSKRILDSAQQDVAKFVDTSQSNL--DVQLISLKDVNDRKYKW 1476
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +2
Query: 254 ESTRTSLDAARRELNDLQRNSAELQRRRTLQTKLEDERNMLQGECERLRDEVQRLRIEMV 433
EST T+ +ELND+Q N + R+ ++ ML+G + + E +
Sbjct: 295 ESTTTNTTEVLKELNDIQENKS----RKNVEKATAATEEMLRGHHKPVEGTTATSEKESI 350
Query: 434 NEE 442
EE
Sbjct: 351 KEE 353
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/68 (23%), Positives = 34/68 (50%)
Frame = +2
Query: 209 IIETKSALDDTTQRLESTRTSLDAARRELNDLQRNSAELQRRRTLQTKLEDERNMLQGEC 388
I++ + LD T + + L A L+++ AELQ + ++++K + + E
Sbjct: 1093 IVQEQEFLDSHTVLISDLKRDLSALSTVLSNVSA-IAELQAKSSIKSKPLTLKTATESEI 1151
Query: 389 ERLRDEVQ 412
+ RD++Q
Sbjct: 1152 KGYRDQIQ 1159
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 302 LQRNSAELQRRRTLQTKLEDERNMLQGECERLRDEVQRLRIE 427
+ SAE + + LQ + E + Q E ERL+ E +R + E
Sbjct: 67 IYNGSAEAGKEKKLQKQRAQEERIRQKEAERLKREKERQQRE 108
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/57 (26%), Positives = 32/57 (56%)
Frame = +2
Query: 242 TQRLESTRTSLDAARRELNDLQRNSAELQRRRTLQTKLEDERNMLQGECERLRDEVQ 412
+Q + S ++ LD + + L+ A+++ + +++E ERN L ERL D+++
Sbjct: 968 SQAITSVKSKLDETLSKSSKLE---ADIEHLKNKVSEVEVERNALLASNERLMDDLK 1021
Score = 25.0 bits (52), Expect = 8.4
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Frame = +2
Query: 158 NNYASHINSH*DYFYSNIIETKSALDDTTQRL---ESTRTSLDAARRELNDLQRNSAELQ 328
N+ + + H S + +K L TT+ L E+ R SL +L + ++ + ++
Sbjct: 1579 NSRLADLEYHKSQVESELGRSKLKLASTTEELQLAENERLSLTTRMLDLQNQVKDLSNIK 1638
Query: 329 RR-----RTLQTKLEDERNMLQGECERLRDEVQRLRIEMVNEEKR 448
RTL++ LED LQ EC+ + V+ L+ + + + R
Sbjct: 1639 DSLSEDLRTLRS-LEDSVASLQKECKIKSNTVESLQDVLTSVQAR 1682
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 26.6 bits (56), Expect = 2.7
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +2
Query: 221 KSALDDTTQRLESTRTSLDAARRELNDLQ-RNSAELQRRRTLQTKLEDERNMLQGECERL 397
++ ++ + + + R+ L+ R + + L + AEL +R L+ K E E L R+
Sbjct: 550 QAGVEQERKAVIAQRSLLELRRGQADTLATQREAELAAQRALKQKQESEAESL-----RV 604
Query: 398 RDEVQRLRIEMVNEEK 445
++E+ + E + EK
Sbjct: 605 QEEINKRNAERIRREK 620
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 26.2 bits (55), Expect = 3.6
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +2
Query: 242 TQRLESTRTSLDAARRELNDLQRNSAELQRRRTLQTKLEDERNMLQGECERLRDEVQRLR 421
T L+S + +++ D + A LQ+ + L+ +LE +RN L LR+E+Q L+
Sbjct: 7 TNVLQSNENIVQYYTQKIQDAEL--AILQKTQNLR-RLEAQRNGLNARVRLLREEIQLLQ 63
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 287 RELNDLQRNSAELQRRRTLQTKLEDERNMLQG-ECERL 397
RE+ + + +LQR R L+ K E+E+ Q E +R+
Sbjct: 38 REITEERNRQRKLQRERELRQKYEEEQRRQQAMEAKRI 75
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +2
Query: 287 RELNDLQRNSAELQRRRTLQTKLEDERNMLQGECERLRDEVQRLRIEMVNEEK 445
REL ++ + +++ L+ E+ER + E ERL ++ + +E +E+
Sbjct: 586 RELKKIREKEKKRDKKKQLKLAKEEERQ--RREAERLAEQAAQKALEAKRQEE 636
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 314 SAELQRRRTLQTKLEDERNMLQGECERLRDEVQRLRIEMVNEEK 445
S + ++RR ++ + R +LQ E ++L+D Q L+ + +EK
Sbjct: 135 SMDEEKRRKIEESDKWHRVLLQAEGKKLKDNEQLLKKSIRRKEK 178
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +3
Query: 3 YRLRSTPNREDRSICVN*ITEFCQ----MVDSENWDLSLRLLS 119
+ L TP ++ SI +N IT+FC +VD + +LS LS
Sbjct: 329 HSLGDTPVGDNSSIVLNLITDFCNEYRTVVDGRSEELSATELS 371
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = +2
Query: 203 SNIIETKSALDDTTQRLESTRTSLDAARRELNDLQRNSAELQRRRTLQTKLEDERNM 373
S+ + K+ + ++L + + ++LND + EL+ TL E E+N+
Sbjct: 260 SDATKHKNEIFQLEEKLHEASHEAEISIKKLNDAENRIKELENNPTLSFNPELEKNL 316
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 251 LESTRTSLDAARRELNDL--QRNSAELQRRRTLQTKLEDERNMLQGECERLRDEVQRLRI 424
L + +TS+D R ELN+L Q N +E ++ ++ E + ++ + + + ++L
Sbjct: 150 LNALQTSIDTIRNELNELRDQLNDSESKKLSDKFVEIRSELDEVRKQQDGYYKDQRKLIA 209
Query: 425 EMVNEE 442
E +E+
Sbjct: 210 ERDDEK 215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,838,657
Number of Sequences: 5004
Number of extensions: 35547
Number of successful extensions: 122
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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