Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11m22
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 233 2e-62
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 137 2e-33
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 136 3e-33
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 133 2e-32
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 117 2e-27
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 97 2e-21
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 96 5e-21
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 32 0.085
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 31 0.20
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 27 2.4
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 26 5.6
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 25 9.8
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 25 9.8
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 25 9.8
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 233 bits (570), Expect = 2e-62
Identities = 111/200 (55%), Positives = 149/200 (74%), Gaps = 1/200 (0%)
Frame = +1
Query: 61 YDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRKI 240
YDRA++VFSPDG LLQVEY QEAVR+G+TA E+K+V KLQ +KI
Sbjct: 4 YDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQKI 63
Query: 241 CLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSN 420
++D+HV +AFAGL ADARILI++A++E Q+HKL + DPV++EY+TRY+AG++QKYTQS
Sbjct: 64 AMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSG 123
Query: 421 GRRPFGISCLIGGFDY-DGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEV 597
G RPFG+S LI GFD D +P ++QTEP+GIY WKA A GR++K RE+LEKN+ E
Sbjct: 124 GVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNW--KEG 181
Query: 598 ATENGAVKLAIRALLEVVQS 657
+ + + LA+ +LLEVVQ+
Sbjct: 182 LSRDETIHLAVSSLLEVVQT 201
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 137 bits (331), Expect = 2e-33
Identities = 77/204 (37%), Positives = 112/204 (54%), Gaps = 1/204 (0%)
Frame = +1
Query: 49 MSARYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKL-QEER 225
MS YD T+FSP+G L QVEYA EA+ A EKK +KL ++E
Sbjct: 1 MSRSYDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEE 60
Query: 226 TVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQK 405
+ K+ + D+++ A AGLTADA ILIN A+ Q + T + + E + R + LKQ
Sbjct: 61 SAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQG 120
Query: 406 YTQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYT 585
YTQ G RPFG+S L G+D+ LFQ+ PSG Y W+AN+ G ++ +V+ + + Y
Sbjct: 121 YTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYK 180
Query: 586 ADEVATENGAVKLAIRALLEVVQS 657
D E A +A++ L + + S
Sbjct: 181 DDINLDEASA--MAVKFLSKTLDS 202
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 136 bits (329), Expect = 3e-33
Identities = 75/211 (35%), Positives = 116/211 (54%), Gaps = 6/211 (2%)
Frame = +1
Query: 40 FLTMSARYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQE 219
F+T S YDR + FSP+G L QVEYA EA++ GSTA EK+ + L E
Sbjct: 2 FMTRS-EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLME 60
Query: 220 ERTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLK 399
+V K+ +D H+ A +GLTADAR +I A+++ Q+H+ T ++P +E T+ I L
Sbjct: 61 SHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLA 120
Query: 400 QKYTQSNG------RRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVR 561
++ + RPFG++ LI G D G P L+ +EPSG Y+ ++A A G ++ +
Sbjct: 121 LRFGEGEDGEERIMSRPFGVALLIAGIDEHG-PQLYHSEPSGTYFRYEAKAIGSGSEPAK 179
Query: 562 EFLEKNYTADEVATENGAVKLAIRALLEVVQ 654
L K + D E A L ++ L +V++
Sbjct: 180 SELVKEFHKDMTLEE--AEVLILKVLRQVME 208
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 133 bits (322), Expect = 2e-32
Identities = 75/204 (36%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Frame = +1
Query: 49 MSARYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERT 228
M+ +Y ++T FSP+G L+Q+EYA AV G T+ EKK ++L +
Sbjct: 1 MTDKYAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGAS 60
Query: 229 VRKICLLDDHVVMAFAGLTADARILINRAQIECQS--HKLTVEDPVTLEYITRYIAGLKQ 402
+ K+C + + M ++G+ D R+L+++++ Q+ K+ E P T + + + IA + Q
Sbjct: 61 LEKVCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPT-KILVQEIASVMQ 119
Query: 403 KYTQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNY 582
+ TQS G RPFG+S L+ G D G P L+Q +PSG Y+ WKA A G+S+ + FLEK Y
Sbjct: 120 ESTQSGGVRPFGVSLLVAGMDEKG-PSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRY 178
Query: 583 TADEVATENGAVKLAIRALLEVVQ 654
DE+ ++ AV AI AL E +
Sbjct: 179 N-DELELDD-AVHTAILALKETFE 200
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 117 bits (281), Expect = 2e-27
Identities = 64/203 (31%), Positives = 106/203 (52%)
Frame = +1
Query: 58 RYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRK 237
+YD T +SP G L QVEYA EA+++GS K++ +L + +K
Sbjct: 5 QYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEELSSYQ--KK 62
Query: 238 ICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQS 417
+ +DDH+ +A AGL DAR+L N + E S K P+ + + +A Q TQ
Sbjct: 63 LIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQE 122
Query: 418 NGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEV 597
GRRP+G+ L+ G+D G PHL + +PSG+ E+ + G +++ R ++E+N
Sbjct: 123 YGRRPYGVGFLVIGYDESG-PHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPD 181
Query: 598 ATENGAVKLAIRALLEVVQSGQK 666
++ + A+RAL + + Q+
Sbjct: 182 SSREELILSALRALRDTLSKDQE 204
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 97.1 bits (231), Expect = 2e-21
Identities = 61/194 (31%), Positives = 94/194 (48%), Gaps = 1/194 (0%)
Frame = +1
Query: 61 YDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRKI 240
YD + FSPDG L Q EYA +AV ST EK +KL + R +I
Sbjct: 8 YDLGL-FFSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVNNRI 66
Query: 241 CLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSN 420
+D H+ +A G D + ++ RA+ E S + P+ I + Q +T +
Sbjct: 67 GSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYS 126
Query: 421 GRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEK-NYTADEV 597
RPFG+ + +D +G PHL+ EP+G+Y+ + A G+ + R LEK N+++ ++
Sbjct: 127 SVRPFGVMSFVATYDSEG-PHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKLNFSSLKM 185
Query: 598 ATENGAVKLAIRAL 639
AVK A R L
Sbjct: 186 ---KDAVKEAARIL 196
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 95.9 bits (228), Expect = 5e-21
Identities = 59/210 (28%), Positives = 100/210 (47%), Gaps = 2/210 (0%)
Frame = +1
Query: 43 LTMSARYDRAITVFSPDGHLLQVEYAQEAVRK-GSTAXXXXXXXXXXXXXEKKSVAKLQE 219
++ + +DR ITVFSP+G L QVEYA +A G T+ +KK KL +
Sbjct: 1 MSQARGFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLID 60
Query: 220 ERTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLK 399
TV+ + + + G ADAR ++RA+ E + P+ + + + +A +
Sbjct: 61 ASTVKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIA 120
Query: 400 QKYTQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKN 579
Q TQ RP G++ + D + P LF+ +P+G Y +KA + G +LEK
Sbjct: 121 QVSTQRAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKR 180
Query: 580 YTADEVATE-NGAVKLAIRALLEVVQSGQK 666
+ D + + V+ I+AL+ + + K
Sbjct: 181 FKKDGIPSNLTDTVETGIQALMSSLSTDFK 210
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 31.9 bits (69), Expect = 0.085
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 2/109 (1%)
Frame = +1
Query: 253 DHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRR- 429
D +V+ +G ADA L+ R Q + E ++ + + L G+R
Sbjct: 52 DDLVIGASGFEADALALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLY------GKRF 105
Query: 430 -PFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLE 573
P+ + + G D +G ++ +P G Y A G +A + FL+
Sbjct: 106 FPYYVYTTVAGIDKEGKGEIYSFDPVGSYEREWCRAGGSAANFITPFLD 154
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 30.7 bits (66), Expect = 0.20
Identities = 14/72 (19%), Positives = 37/72 (51%)
Frame = +1
Query: 193 KKSVAKLQEERTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEY 372
+ S L +TV+K+ ++ +++ AG AD + +EC+ H+L ++ +++
Sbjct: 80 RASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISVSA 139
Query: 373 ITRYIAGLKQKY 408
++ ++ + Y
Sbjct: 140 ASKILSNITYSY 151
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = -2
Query: 308 FINIRASA-VNPANAITT*S--SKRHIFLTVRSSCNLATDF 195
F+N SA +NP N + T SK+ +FLT SS ++ DF
Sbjct: 261 FMNTDISADINPINVLITALLISKKVLFLTKTSSASVLADF 301
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 5.6
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Frame = -2
Query: 473 PS*SNPPIKHEIPNGRRPLL*VYFCLRP--------AMYLVIYS-NVTGSSTVNLCD*HS 321
P+ P +IPN R +L + C P MYL S N T S + L HS
Sbjct: 375 PNFPEPKFFEDIPNTERCILSAFICSPPQLPLPNPLRMYLPCPSLNSTEVSVITLAPQHS 434
Query: 320 ICARFINIR-ASAVNPANAITT*SSKR 243
IN+ A A+ IT + KR
Sbjct: 435 FLNIVINLNPALALKSYTIITLLNGKR 461
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 471 IIVESSYQTRNTKWSTTIALSIFLFETCYVSCNILQCYWILD 346
II S Y+T N W++TI ++CN+LQ + +D
Sbjct: 549 IIYPSLYKTANEHWNSTIQA---------IACNVLQIFVDMD 581
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.0 bits (52), Expect = 9.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 408 IFLFETCYVSCNILQC 361
I LF+TCY+ C + C
Sbjct: 567 IVLFDTCYMVCTYIVC 582
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 475 SPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTA 588
SP LF I + NAT S +V FL+K T+
Sbjct: 247 SPKLFSPSKQAIMGTRQPNATSGSPLSVTPFLQKTSTS 284
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,862
Number of Sequences: 5004
Number of extensions: 55648
Number of successful extensions: 153
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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