Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11m21
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899...    29   3.3  
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671...    29   3.3  
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681...    28   5.7  
01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205     28   5.7  
01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188     27   9.9  
01_04_0027 + 15216424-15216672                                         27   9.9  

>06_03_0529 -
           21788132-21788395,21788414-21788511,21789458-21789953,
           21790033-21790134,21790218-21790270,21790354-21790414,
           21790491-21790640,21791298-21791350,21794125-21794152
          Length = 434

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 538 LQEINRALQSNTYLTGQFLTIADVAL 615
           L  +N  L SNTYL G  +T+AD+ +
Sbjct: 162 LGALNTHLASNTYLVGHSVTLADIVM 187


>02_02_0095 +
           6716327-6716335,6717302-6717451,6717523-6717583,
           6717646-6717725,6717802-6717903,6717982-6718471,
           6718796-6719171,6720320-6720379,6720887-6721056,
           6721287-6721340,6721384-6721523,6722362-6722511,
           6722582-6722642,6722705-6722784,6722933-6723034,
           6723111-6723612,6724401-6724776,6725419-6725493,
           6726058-6726198,6726264-6726282
          Length = 1065

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 538 LQEINRALQSNTYLTGQFLTIADVAL 615
           L  +N  L SNTYL G  +T+AD+ +
Sbjct: 147 LGALNTHLASNTYLVGHSVTLADIVM 172



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 538 LQEINRALQSNTYLTGQFLTIADVAL 615
           L  +N  L SNTYL G  +T+AD+ +
Sbjct: 708 LGALNTHLASNTYLVGHSVTLADIVM 733


>10_06_0131 -
           11066033-11066251,11066548-11067012,11067102-11068177,
           11068269-11068422,11068511-11068601,11069016-11069152
          Length = 713

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 469 QWLEYISMFSNQAVANSTFAFKFLQEINRALQSNTYLTGQFLTIADVALY 618
           +WLEY   F   +      +F     ++  L S T+L G  LTIAD+ ++
Sbjct: 79  EWLEYAPTFLLGSEFEVACSF-----VDGYLMSRTFLVGHVLTIADITVW 123


>01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205
          Length = 220

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 496 SNQAVANSTFAFKFLQEINRA-LQSNTYLTGQFLTIADVA 612
           + + V NS    K + E+  A L  NTYL G FL+  D++
Sbjct: 132 NQKVVDNSLEKLKKVLEVYEARLSQNTYLAGNFLSFVDLS 171


>01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188
          Length = 216

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 532 KFLQEINRALQSNTYLTGQFLTIADVALYYIXYPLL--EHMSV 654
           K L+     L  + YL G F+++AD++ +   Y LL   H SV
Sbjct: 142 KALEVYEAQLSKSKYLAGDFISLADISHFPTVYYLLASAHASV 184


>01_04_0027 + 15216424-15216672
          Length = 82

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 496 SNQAVANSTFA-FKFLQEINRA-LQSNTYLTGQFLTIADVA 612
           +NQ + + T    K + E+  A L  NTYL G+F++ A+++
Sbjct: 35  TNQKIVDETVEKLKKVLEVYEAHLSENTYLAGEFVSFANIS 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,768,022
Number of Sequences: 37544
Number of extensions: 293128
Number of successful extensions: 471
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)