Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11m13
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   4.3  
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    26   5.7  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   5.7  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    25   7.6  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   7.6  

>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 74  YVLLKTSKMKTIYFVLLISVCAVSAIYLPDDSISAD 181
           ++  KT K    +  LL++   +   Y+PD+S SA+
Sbjct: 233 HMYYKTGKTDNNFHFLLVATLCLGYTYMPDESPSAN 268


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 68  AFYVLLKTSKMKTIYFVLLISVC 136
           AFY LLK  K+K I F   ++ C
Sbjct: 125 AFYHLLKEGKLKNIVFTSSMAAC 147


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -2

Query: 648 FPWASNFFDFLSSFSHI-FSCLY 583
           FP AS  F+FLS   HI + C+Y
Sbjct: 222 FPLASLAFEFLSRNGHINYGCIY 244


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 71  FYVLLKTSKMKTIYFVLLI--SVCAVSAIYLPDDSISAD 181
           FYVLL +SK+ T +FV  +  S  A  A YL   S S D
Sbjct: 75  FYVLLTSSKVGTYHFVSGVDASSSASLAAYLNTLSYSLD 113


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 595 KNMGEGRQEVKKIRGPRKKRSLKKMTK 675
           +N  +  +E+KKIR   KKR  KK  K
Sbjct: 579 ENKRKQERELKKIREKEKKRDKKKQLK 605


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,317,916
Number of Sequences: 5004
Number of extensions: 17876
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)