Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11m12
         (251 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425...    87   2e-18
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315...    87   2e-18
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335...    85   6e-18
12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330...    26   4.8  

>04_03_0871 -
           20441689-20441756,20442220-20442349,20442422-20442507,
           20444271-20444316,20444425-20444547,20445302-20445370
          Length = 173

 Score = 86.6 bits (205), Expect = 2e-18
 Identities = 42/65 (64%), Positives = 46/65 (70%)
 Frame = +3

Query: 54  KKNKVAKXEVQXTXGPQHLXGETXFGXXHIFXSFNDTFVHVTDLSGRETIXRVTGGMKXK 233
           KK +  K E   T GP    GE  FG  HIF SFNDTF+HVTDLSGRET+ R+TGGMK K
Sbjct: 27  KKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 85

Query: 234 ADRDE 248
           ADRDE
Sbjct: 86  ADRDE 90


>02_04_0100 -
           19730137-19730237,19731215-19731344,19731419-19731504,
           19732410-19732455,19732558-19732680,19732779-19732781
          Length = 162

 Score = 86.6 bits (205), Expect = 2e-18
 Identities = 42/65 (64%), Positives = 46/65 (70%)
 Frame = +3

Query: 54  KKNKVAKXEVQXTXGPQHLXGETXFGXXHIFXSFNDTFVHVTDLSGRETIXRVTGGMKXK 233
           KK +  K E   T GP    GE  FG  HIF SFNDTF+HVTDLSGRET+ R+TGGMK K
Sbjct: 5   KKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 63

Query: 234 ADRDE 248
           ADRDE
Sbjct: 64  ADRDE 68


>02_01_0469 -
           3359156-3359500,3359595-3359680,3359766-3359811,
           3359897-3360016,3360622-3360624
          Length = 199

 Score = 85.4 bits (202), Expect = 6e-18
 Identities = 41/65 (63%), Positives = 46/65 (70%)
 Frame = +3

Query: 54  KKNKVAKXEVQXTXGPQHLXGETXFGXXHIFXSFNDTFVHVTDLSGRETIXRVTGGMKXK 233
           +K +  K E   T GP    GE  FG  HIF SFNDTF+HVTDLSGRET+ R+TGGMK K
Sbjct: 4   RKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 62

Query: 234 ADRDE 248
           ADRDE
Sbjct: 63  ADRDE 67


>12_01_0418 -
           3304741-3304904,3305579-3305762,3307254-3307347,
           3308530-3308882,3309140-3309274,3309354-3309392,
           3309587-3309652,3309739-3309834,3310291-3310527,
           3310602-3310722,3310854-3310889,3313062-3313159,
           3313298-3313591,3313842-3313904,3314280-3314438,
           3314557-3314655
          Length = 745

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 138 HIFXSFNDTFVHVTDLSGRETIXRVT 215
           H++    D  V++TDLS RE++   T
Sbjct: 281 HVYSGGRDQSVYLTDLSNRESVLLCT 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,116,632
Number of Sequences: 37544
Number of extensions: 42151
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)