Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11m12
         (251 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...    90   2e-19
Z81594-3|CAB76410.2|  441|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical pr...    25   7.1  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score = 90.2 bits (214), Expect = 2e-19
 Identities = 41/65 (63%), Positives = 47/65 (72%)
 Frame = +3

Query: 54  KKNKVAKXEVQXTXGPQHLXGETXFGXXHIFXSFNDTFVHVTDLSGRETIXRVTGGMKXK 233
           +K K  + +   + GPQ   GE  FG  HIF SFNDTFVH+TD+SGRETI RVTGGMK K
Sbjct: 5   RKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGGMKVK 64

Query: 234 ADRDE 248
           ADRDE
Sbjct: 65  ADRDE 69


>Z81594-3|CAB76410.2|  441|Caenorhabditis elegans Hypothetical
           protein T20F10.5 protein.
          Length = 441

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 226 FMPPVTRXIVSRPDKSV 176
           F+PPVT+ ++S PD +V
Sbjct: 413 FLPPVTQIVLSSPDLAV 429


>Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical
           protein M28.6 protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 99  PQHLXGETXFGXXHIFXSFNDTFVHVTDLSGRETIXRVTGGMK 227
           P H  G T FG  H   + +   + +TDL  R TI  VT G+K
Sbjct: 365 PIHRAG-TQFGFGH---TGHGCQMVITDLKNRVTIAYVTNGLK 403


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,516,436
Number of Sequences: 27780
Number of extensions: 36334
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 219801160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)