Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11m07
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          29   0.043
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      29   0.043
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.0  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   6.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   6.6  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   8.7  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   8.7  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 29.1 bits (62), Expect = 0.043
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +3

Query: 207 HDTRRFRLGLPSPQHVLGLPIGQHIHLSAKINDDLVIRAYTPVSSDEDKGYV 362
           + T RFR GL  PQ   G  +  H+    ++  DL    +T +S+  D GYV
Sbjct: 295 YPTMRFRNGLAFPQRETGATVPLHMQKYVQMIHDL----HTRISTAIDLGYV 342


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 29.1 bits (62), Expect = 0.043
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +3

Query: 207 HDTRRFRLGLPSPQHVLGLPIGQHIHLSAKINDDLVIRAYTPVSSDEDKGYV 362
           + T RFR GL  PQ   G  +  H+    ++  DL    +T +S+  D GYV
Sbjct: 295 YPTMRFRNGLAFPQRETGATVPLHMQKYVQMIHDL----HTRISTAIDLGYV 342


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 573  LIAGGTGIAPMLQLVRHICTDVNDRTELK 659
            L+  GTGIAP      H   ++  R +L+
Sbjct: 970  LVGPGTGIAPFRGFWHHRLAEIKRRPDLE 998


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -3

Query: 628 HICRTS*SIGAMPVPPAIKFNFLTTTFVGGS 536
           H+  TS +  A P PP++          GG+
Sbjct: 40  HLAGTSTTAAATPTPPSVPVGSAVAGTAGGA 70


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 160 ESTNVINFLLDPLDFFPHRQLAIIVAKTTTDPT 62
           E+ NV+    D LD FP  +  +I A T    T
Sbjct: 262 ETYNVVRKFRDVLDEFPQPKHMLIEAYTNLSMT 294


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 160 ESTNVINFLLDPLDFFPHRQLAIIVAKTTTDPT 62
           E+ NV+    D LD FP  +  +I A T    T
Sbjct: 262 ETYNVVRKFRDVLDEFPQPKHMLIEAYTNLSMT 294


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 241 LLNMYWDYRSVNIF 282
           LL+++WDY+ +  F
Sbjct: 67  LLSVWWDYKGIVYF 80


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 241 LLNMYWDYRSVNIF 282
           LL+++WDY+ +  F
Sbjct: 189 LLSVWWDYKGIVYF 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,274
Number of Sequences: 438
Number of extensions: 3928
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)