Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11m05
         (343 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58682-1|AAB07066.1|   69|Homo sapiens ribosomal protein S28 pro...    85   7e-17
L05091-1|AAC15855.1|   69|Homo sapiens ribosomal protein S28 pro...    85   7e-17
CR457055-1|CAG33336.1|   69|Homo sapiens RPS28 protein.                85   7e-17
BC070218-1|AAH70218.1|   69|Homo sapiens ribosomal protein S28 p...    85   7e-17
BC070217-1|AAH70217.1|   69|Homo sapiens ribosomal protein S28 p...    85   7e-17
BC021239-1|AAH21239.1|   69|Homo sapiens ribosomal protein S28 p...    85   7e-17
BC000354-1|AAH00354.1|   69|Homo sapiens ribosomal protein S28 p...    85   7e-17
AB061846-1|BAB79484.1|   69|Homo sapiens ribosomal protein S28 p...    85   7e-17
AL023513-1|CAI19979.1|   57|Homo sapiens protein ( Human DNA seq...    40   0.002
BC068532-1|AAH68532.1|  244|Homo sapiens claudin 12 protein.           28   8.7  
BC036754-1|AAH36754.1|  244|Homo sapiens claudin 12 protein.           28   8.7  
AL136770-1|CAB66704.1|  244|Homo sapiens hypothetical protein pr...    28   8.7  
AJ250713-1|CAB60617.1|  244|Homo sapiens claudin-12 protein.           28   8.7  
AC006153-2|AAP22363.1|  244|Homo sapiens unknown protein.              28   8.7  

>U58682-1|AAB07066.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 38/46 (82%), Positives = 43/46 (93%)
 Frame = +3

Query: 27  ARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 164
           ARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 12  ARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>L05091-1|AAC15855.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 38/46 (82%), Positives = 43/46 (93%)
 Frame = +3

Query: 27  ARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 164
           ARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 12  ARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>CR457055-1|CAG33336.1|   69|Homo sapiens RPS28 protein.
          Length = 69

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 38/46 (82%), Positives = 43/46 (93%)
 Frame = +3

Query: 27  ARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 164
           ARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 12  ARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>BC070218-1|AAH70218.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 38/46 (82%), Positives = 43/46 (93%)
 Frame = +3

Query: 27  ARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 164
           ARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 12  ARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>BC070217-1|AAH70217.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 38/46 (82%), Positives = 43/46 (93%)
 Frame = +3

Query: 27  ARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 164
           ARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 12  ARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>BC021239-1|AAH21239.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 38/46 (82%), Positives = 43/46 (93%)
 Frame = +3

Query: 27  ARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 164
           ARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 12  ARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>BC000354-1|AAH00354.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 38/46 (82%), Positives = 43/46 (93%)
 Frame = +3

Query: 27  ARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 164
           ARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 12  ARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>AB061846-1|BAB79484.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 38/46 (82%), Positives = 43/46 (93%)
 Frame = +3

Query: 27  ARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 164
           ARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 12  ARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>AL023513-1|CAI19979.1|   57|Homo sapiens protein ( Human DNA
           sequence from clone RP1-268D13 on chromosome
           22q11.21-12.2.  ).
          Length = 57

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/32 (56%), Positives = 24/32 (75%)
 Frame = +3

Query: 30  RVVKVLGRTGSQGQCTQVKVEFIGETSRQIIR 125
           +  KVLGRT SQGQCT+V VEF+   S+++ R
Sbjct: 13  KATKVLGRTSSQGQCTRVCVEFMVSQSKRLRR 44


>BC068532-1|AAH68532.1|  244|Homo sapiens claudin 12 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 23  WCTCRESAWPYWFSGPVYSSEGRVHWGDQPSDHQKR 130
           +CTC+    P+W   P+YS    +H   QP   + R
Sbjct: 196 YCTCKSLPSPFW--QPLYSHPPSMHTYSQPYSARSR 229


>BC036754-1|AAH36754.1|  244|Homo sapiens claudin 12 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 23  WCTCRESAWPYWFSGPVYSSEGRVHWGDQPSDHQKR 130
           +CTC+    P+W   P+YS    +H   QP   + R
Sbjct: 196 YCTCKSLPSPFW--QPLYSHPPSMHTYSQPYSARSR 229


>AL136770-1|CAB66704.1|  244|Homo sapiens hypothetical protein
           protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 23  WCTCRESAWPYWFSGPVYSSEGRVHWGDQPSDHQKR 130
           +CTC+    P+W   P+YS    +H   QP   + R
Sbjct: 196 YCTCKSLPSPFW--QPLYSHPPSMHTYSQPYSARSR 229


>AJ250713-1|CAB60617.1|  244|Homo sapiens claudin-12 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 23  WCTCRESAWPYWFSGPVYSSEGRVHWGDQPSDHQKR 130
           +CTC+    P+W   P+YS    +H   QP   + R
Sbjct: 196 YCTCKSLPSPFW--QPLYSHPPSMHTYSQPYSARSR 229


>AC006153-2|AAP22363.1|  244|Homo sapiens unknown protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 23  WCTCRESAWPYWFSGPVYSSEGRVHWGDQPSDHQKR 130
           +CTC+    P+W   P+YS    +H   QP   + R
Sbjct: 196 YCTCKSLPSPFW--QPLYSHPPSMHTYSQPYSARSR 229


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,445,118
Number of Sequences: 237096
Number of extensions: 773811
Number of successful extensions: 1480
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1480
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1910415606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)