Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11m05
         (343 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal pr...    78   1e-15
AF040645-9|AAB94972.2|  197|Caenorhabditis elegans Hypothetical ...    30   0.50 
Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical pr...    27   4.7  
U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical pr...    27   4.7  
Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical pr...    26   6.1  
Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical pr...    26   6.1  
AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical ...    26   6.1  
Z81128-1|CAB03398.1|  568|Caenorhabditis elegans Hypothetical pr...    26   8.1  
Z78415-8|CAB01675.2|  765|Caenorhabditis elegans Hypothetical pr...    26   8.1  
AF013953-1|AAC47750.1|  568|Caenorhabditis elegans mom-5 protein.      26   8.1  

>AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 28 protein.
          Length = 65

 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 37/47 (78%), Positives = 42/47 (89%), Gaps = 1/47 (2%)
 Frame = +3

Query: 27  ARVVKVLGRTGSQGQCTQVKVEFIG-ETSRQIIRNVKGPVRDGDILT 164
           ARV KV+GRTGSQGQCTQV+VEFI  + +R IIRNVKGPVR+GDILT
Sbjct: 7   ARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53


>AF040645-9|AAB94972.2|  197|Caenorhabditis elegans Hypothetical
           protein F52C6.3 protein.
          Length = 197

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 106 PAVRSSET*KDPSVTETSSLFLNLNVKLGGCDRLLQHYCIRL 231
           P   S E  +DP   E+S +  NLNVK+    + L H  IR+
Sbjct: 64  PLRESEEVTEDPISVESSEVIGNLNVKVAETQQELHHEGIRI 105


>Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical
           protein T06C12.3 protein.
          Length = 346

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 336 FMLCIYSELNTIKWSSLTVL*V*HINLCRWY 244
           + L +YSE N I+W  L+++    I LC  Y
Sbjct: 180 YTLALYSESNVIQWEILSLIIAAGIVLCFQY 210


>U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical
           protein F09C12.2 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 78  QVKVEFIGETSRQIIRNVKGP-VRD 149
           Q+ +E++G    Q+IR +K P +RD
Sbjct: 267 QLLIEYLGTPDEQVIRRIKSPSIRD 291


>Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical
           protein F26D2.7 protein.
          Length = 341

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 336 FMLCIYSELNTIKWSSLTVL*V*HINLCRWY 244
           F++  Y+E NTI+W +L++L    I +C  Y
Sbjct: 180 FIMMPYNENNTIQWKALSLLISAGILICFQY 210


>Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 157 SSLFLNLNVKLGGCDRLLQ-HYCIRLR 234
           ++ FLNL +K   CD LL+ ++C ++R
Sbjct: 74  TNFFLNLMIKPSPCDLLLKTYFCSKIR 100


>AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 157 SSLFLNLNVKLGGCDRLLQ-HYCIRLR 234
           ++ FLNL +K   CD LL+ ++C ++R
Sbjct: 74  TNFFLNLMIKPSPCDLLLKTYFCSKIR 100


>Z81128-1|CAB03398.1|  568|Caenorhabditis elegans Hypothetical
           protein T23D8.1 protein.
          Length = 568

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 228 VKAFTCTIYINLCVKLTKP-SKMTILLYSARN 320
           ++ F CT+Y  +C  L KP      L  SA+N
Sbjct: 86  IRLFLCTVYAPVCTVLEKPIQPCRELCLSAKN 117


>Z78415-8|CAB01675.2|  765|Caenorhabditis elegans Hypothetical
           protein C17G1.6a protein.
          Length = 765

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 11  TRQLWCTCRESAWPYWFSGPVYSSEGRVHWGDQPSDHQK 127
           TR  W T   S W +  + P+Y  +G+++  D+ S   K
Sbjct: 476 TRPYW-TRTASGWIHIKNPPLYKPDGQIYTSDEQSAETK 513


>AF013953-1|AAC47750.1|  568|Caenorhabditis elegans mom-5 protein.
          Length = 568

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 228 VKAFTCTIYINLCVKLTKP-SKMTILLYSARN 320
           ++ F CT+Y  +C  L KP      L  SA+N
Sbjct: 86  IRLFLCTVYAPVCTVLEKPIQPCRELCLSAKN 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,547,241
Number of Sequences: 27780
Number of extensions: 127860
Number of successful extensions: 287
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)