Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11m05
         (343 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   3.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   5.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    20   9.5  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          20   9.5  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          20   9.5  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          20   9.5  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          20   9.5  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          20   9.5  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          20   9.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          20   9.5  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    20   9.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   9.5  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 237 FTCTIYINLCVKLT 278
           FTC I   +C KLT
Sbjct: 636 FTCNIMDAICTKLT 649


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 173 FKKSEDVSVTDGSFHVSDDLT 111
           + KS+D+ V D S + S D+T
Sbjct: 118 YVKSDDIWVPDISVYNSGDMT 138


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 116 LTAGLPNELDL 84
           L  GLPNEL L
Sbjct: 90  LVLGLPNELSL 100


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 98  NELDLHLSTLALRTSTAKHFHDTCTKAGV 12
           NE+  H + LA+    +++   TC K  +
Sbjct: 184 NEITEHRTVLAVNIEKSENETKTCKKYAI 212


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 98  NELDLHLSTLALRTSTAKHFHDTCTKAGV 12
           NE+  H + LA+    +++   TC K  +
Sbjct: 184 NEITEHRTVLAVNIEKSENETKTCKKYAI 212


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 98  NELDLHLSTLALRTSTAKHFHDTCTKAGV 12
           NE+  H + LA+    +++   TC K  +
Sbjct: 184 NEITEHRTVLAVNIEKSENETKTCKKYAI 212


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 98  NELDLHLSTLALRTSTAKHFHDTCTKAGV 12
           NE+  H + LA+    +++   TC K  +
Sbjct: 184 NEITEHRTVLAVNIEKSENETKTCKKYAI 212


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 98  NELDLHLSTLALRTSTAKHFHDTCTKAGV 12
           NE+  H + LA+    +++   TC K  +
Sbjct: 184 NEITEHRTVLAVNIEKSENETKTCKKYAI 212


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 98  NELDLHLSTLALRTSTAKHFHDTCTKAGV 12
           NE+  H + LA+    +++   TC K  +
Sbjct: 184 NEITEHRTVLAVNIEKSENETKTCKKYAI 212


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 98  NELDLHLSTLALRTSTAKHFHDTCTKAGV 12
           NE+  H + LA+    +++   TC K  +
Sbjct: 184 NEITEHRTVLAVNIEKSENETKTCKKYAI 212


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 98  NELDLHLSTLALRTSTAKHFHDTCTKAGV 12
           NE+  H + LA+    +++   TC K  +
Sbjct: 184 NEITEHRTVLAVNIEKSENETKTCKKYAI 212


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 101 PNELDLHLSTLALRTSTAKHFHDTCTKAG 15
           PNEL  +  +  ++ +T   F D  T+ G
Sbjct: 477 PNELKPNDKSQVIKQNTWTVFRDAITQTG 505


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,116
Number of Sequences: 438
Number of extensions: 1448
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)