Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11m01
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    31   0.11 
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    29   0.80 
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    27   1.8  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   2.4  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    27   3.2  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    25   7.5  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    25   9.9  
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.9  

>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 562 QVIHSVICLHYNHPRTVHNLK-DLLTSVLIHQHNQ 461
           Q+I   IC  +NH R +HN+K  LL + + H + Q
Sbjct: 285 QIIDFTICYTHNHHRRIHNIKARLLETHIFHPNTQ 319


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = -3

Query: 274 ICYKNH*DLFCLEGDLILLNS-NFRYIYNHY*EMSFFLEKLTKNSLLVLSEHFLTFFNKI 98
           I ++NH ++ C+  DL ++N  NF  +Y +   M   L  + K+   +   HF +F  +I
Sbjct: 75  IHFRNHRNITCIY-DLDIINPYNFNEVYIYEELMEADLNAIIKSGQPLTDAHFQSFIYQI 133

Query: 97  LSSCSIFKYFNEIIKRL 47
           L         N I + L
Sbjct: 134 LCGLKYIHSANVIHRDL 150


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +1

Query: 517 FLDDYSANILLNELLVKKNYTQAADIAALIMLXEEYNNDILCSLCQYSSYM 669
           FL+D + N+++N       Y + A  + L  + E+Y+  + C+  QY+ Y+
Sbjct: 105 FLEDLNPNVIIN------TYLEFASASNLFSIIEQYDVVLDCTDNQYTRYL 149


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1125

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 217  SAISSPLLNKINLNDFYNKLDQTHSSK 297
            SA SSPL +  N  D +N     HSSK
Sbjct: 980  SASSSPLRSYFNEEDSFNNASAAHSSK 1006


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 205  ENWNSAISSPLLNKINLNDFYNK 273
            ENWNS+++SP+   + ++ F  K
Sbjct: 1529 ENWNSSLTSPIPVSVGIDAFNEK 1551


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 217 SAISSPLLN-KINLNDFYNKLDQTHSSKGI 303
           +A+S  L N K+N NDF N L +   + G+
Sbjct: 514 AAVSGNLENIKVNRNDFLNALSEVRPAYGV 543


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +1

Query: 460 FDYVDELIQMLKDPLNYGLFLDDYSANIL--LNELLVKKNYTQAADIAALIMLXEEYNND 633
           FD   + +  L+ P  + L L   S+ +    NE+ ++KNYT   D    ++    Y   
Sbjct: 286 FDVRVDSLSQLEFPEQFWLELTAESSLLARTFNEICIEKNYTDLLDKMPEVVQLTYYIER 345

Query: 634 ILCSLCQYSSY 666
              SL   SSY
Sbjct: 346 QYVSLRDKSSY 356


>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 574 YTQAADIAALIMLXEEYNNDILCSLCQYSSYM 669
           Y QA DIA ++ L  EY++     +  +S+Y+
Sbjct: 79  YAQAFDIAEIVNLIREYSHKYHKHIPAFSAYI 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,239,041
Number of Sequences: 5004
Number of extensions: 39985
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)