Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11m01
         (669 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D87453-1|BAA13394.1|  415|Homo sapiens KIAA0264 protein.               53   8e-07
BC064902-1|AAH64902.1|  414|Homo sapiens mitochondrial ribosomal...    53   8e-07

>D87453-1|BAA13394.1|  415|Homo sapiens KIAA0264 protein.
          Length = 415

 Score = 53.2 bits (122), Expect = 8e-07
 Identities = 32/152 (21%), Positives = 66/152 (43%)
 Frame = +1

Query: 169 KRTFLSNDYKCNENWNSAISSPLLNKINLNDFYNKLDQTHSSKGIISAIDVDIFANAVTE 348
           KR  LS+ Y  +  W +           L D  + +D+T   K  +S++ +    + ++ 
Sbjct: 27  KRYLLSSAYVDSHKWEAREKEHYC----LADLASLMDKTFERKLPVSSLTISRLIDNISS 82

Query: 349 PVXXXXXXXXXXXXXXSAETGSMLESTSHATVRHSIKFDYVDELIQMLKDPLNYGLFLDD 528
                           S     +   T H  +R  +K+D  D+ +  L + + YG+F D+
Sbjct: 83  REEIDHAEYYLYKFRHSPNCWYLRNWTIHTWIRQCLKYDAQDKALYTLVNKVQYGIFPDN 142

Query: 529 YSANILLNELLVKKNYTQAADIAALIMLXEEY 624
           ++ N+L++  + K+NY  A  +   +M+ E +
Sbjct: 143 FTFNLLMDSFIKKENYKDALSVVFEVMMQEAF 174


>BC064902-1|AAH64902.1|  414|Homo sapiens mitochondrial ribosomal
           protein S27 protein.
          Length = 414

 Score = 53.2 bits (122), Expect = 8e-07
 Identities = 32/152 (21%), Positives = 66/152 (43%)
 Frame = +1

Query: 169 KRTFLSNDYKCNENWNSAISSPLLNKINLNDFYNKLDQTHSSKGIISAIDVDIFANAVTE 348
           KR  LS+ Y  +  W +           L D  + +D+T   K  +S++ +    + ++ 
Sbjct: 26  KRYLLSSAYVDSHKWEAREKEHYC----LADLASLMDKTFERKLPVSSLTISRLIDNISS 81

Query: 349 PVXXXXXXXXXXXXXXSAETGSMLESTSHATVRHSIKFDYVDELIQMLKDPLNYGLFLDD 528
                           S     +   T H  +R  +K+D  D+ +  L + + YG+F D+
Sbjct: 82  REEIDHAEYYLYKFRHSPNCWYLRNWTIHTWIRQCLKYDAQDKALYTLVNKVQYGIFPDN 141

Query: 529 YSANILLNELLVKKNYTQAADIAALIMLXEEY 624
           ++ N+L++  + K+NY  A  +   +M+ E +
Sbjct: 142 FTFNLLMDSFIKKENYKDALSVVFEVMMQEAF 173


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,626,741
Number of Sequences: 237096
Number of extensions: 1142799
Number of successful extensions: 5444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5444
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)