Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11m01
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-12|CAB07392.5|  424|Caenorhabditis elegans Hypothetical p...    59   3e-09
Z81569-2|CAB04602.4|  424|Caenorhabditis elegans Hypothetical pr...    59   3e-09
U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    32   0.42 
AF024503-16|AAG24086.2|  287|Caenorhabditis elegans Serpentine r...    30   1.7  

>Z92834-12|CAB07392.5|  424|Caenorhabditis elegans Hypothetical
           protein K11B4.1 protein.
          Length = 424

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 3/166 (1%)
 Frame = +1

Query: 169 KRTFLSNDYKCNENWNSAISSPLLNKINLNDFYNKLDQTHSS---KGIISAIDVDIFANA 339
           ++  LS+ +   + W+    +  L K+ L   Y  +          G  SA+DVD     
Sbjct: 21  RQPVLSSSFSLEKEWSDRHVA--LGKLGLGGDYEWISAVQKKFIGGGYASAVDVDAAVCV 78

Query: 340 VTEPVXXXXXXXXXXXXXXSAETGSMLESTSHATVRHSIKFDYVDELIQMLKDPLNYGLF 519
             +                S +    LES+ +A VR  +K+   + +I +  DP+NYG+F
Sbjct: 79  AEQKDQVDDVIELLYKLRHSVKAAEKLESSEYAIVRLLLKYQ-PETIITLANDPINYGVF 137

Query: 520 LDDYSANILLNELLVKKNYTQAADIAALIMLXEEYNNDILCSLCQY 657
           L+ + A I+++  L   N   AA I   ++  EE +N++L  L  Y
Sbjct: 138 LNQHLACIVIDHFLKTSNIQAAARIVTWMIQQEELDNELLNILGLY 183


>Z81569-2|CAB04602.4|  424|Caenorhabditis elegans Hypothetical
           protein K11B4.1 protein.
          Length = 424

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 3/166 (1%)
 Frame = +1

Query: 169 KRTFLSNDYKCNENWNSAISSPLLNKINLNDFYNKLDQTHSS---KGIISAIDVDIFANA 339
           ++  LS+ +   + W+    +  L K+ L   Y  +          G  SA+DVD     
Sbjct: 21  RQPVLSSSFSLEKEWSDRHVA--LGKLGLGGDYEWISAVQKKFIGGGYASAVDVDAAVCV 78

Query: 340 VTEPVXXXXXXXXXXXXXXSAETGSMLESTSHATVRHSIKFDYVDELIQMLKDPLNYGLF 519
             +                S +    LES+ +A VR  +K+   + +I +  DP+NYG+F
Sbjct: 79  AEQKDQVDDVIELLYKLRHSVKAAEKLESSEYAIVRLLLKYQ-PETIITLANDPINYGVF 137

Query: 520 LDDYSANILLNELLVKKNYTQAADIAALIMLXEEYNNDILCSLCQY 657
           L+ + A I+++  L   N   AA I   ++  EE +N++L  L  Y
Sbjct: 138 LNQHLACIVIDHFLKTSNIQAAARIVTWMIQQEELDNELLNILGLY 183


>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +1

Query: 400 AETGSMLESTSHATVRHSIKFDYVDELIQMLKDPLNYGLFLDDYSANILLNEL 558
           ++     ES S   V  S+  +YVDELIQ L   L Y  + DD   + + N++
Sbjct: 296 SDVNKYFESLSRKNV-DSVSREYVDELIQSLSIQLKYLTYHDDCKCDDIWNQM 347


>AF024503-16|AAG24086.2|  287|Caenorhabditis elegans Serpentine
           receptor, class x protein23 protein.
          Length = 287

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -2

Query: 545 NMFAL*SSKNSP*FKGSFNICINSST*SNLILCL---TVACDVDSSMLPV 405
           N+F L +++N     GSF I   +    NL +CL    V C +  S +P+
Sbjct: 22  NLFVLAAARNMSSMNGSFGIITKNHAICNLTMCLLYVLVVCPMQLSNIPI 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,050,714
Number of Sequences: 27780
Number of extensions: 211855
Number of successful extensions: 584
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)