Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11l24
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC216.04c |||methionine sulfoxide |Schizosaccharomyces pombe|c... 106 2e-24
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 29 0.46
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos... 27 3.2
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 4.2
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 26 5.6
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 26 5.6
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 7.4
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 7.4
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 25 9.8
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 25 9.8
>SPBC216.04c |||methionine sulfoxide |Schizosaccharomyces pombe|chr
2|||Manual
Length = 138
Score = 106 bits (255), Expect = 2e-24
Identities = 53/125 (42%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Frame = +1
Query: 178 EDKESLKKRLTPLQYHVTQEAGTERPFTGCYNKCYD-EGMYVCIVCRQDLFSSKTKFDSG 354
+ ++ KK L P +Y + ++ GTE P G + + +G++VC C++ L+ + TKF+S
Sbjct: 7 KSEDEWKKELGPEKYRIMRQKGTEHPGAGRFTHQFPKQGVFVCAACKELLYKASTKFESH 66
Query: 355 CGWPAFNDVLAKEKVTLHRDTSAGLVRTEVRCSKCAAHLGHVF-DDGPA-PTRKRFCINS 528
CGWPAF D L KV D S G+ R E C+ C HLGH+F +G + PT +R CINS
Sbjct: 67 CGWPAFFDNL-PGKVKRIEDNSYGMHRVEAVCANCGGHLGHIFKGEGYSNPTDERHCINS 125
Query: 529 ASLDF 543
ASL+F
Sbjct: 126 ASLEF 130
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 29.5 bits (63), Expect = 0.46
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 448 CSKCAAHLGHVFDDGPAPTRKRFCINSAS 534
C+KC A LG F D + FC N +S
Sbjct: 334 CTKCGATLGPFFQDSSVEVKISFCHNCSS 362
>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 395 FSLARTSLNAGQPHPESNFVFELKRSCLHTIHT 297
F L + ++NAGQ + E NF L + LH T
Sbjct: 58 FQLGKNAVNAGQEYVEQNFGKWLSTTRLHHYFT 90
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 4.2
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +1
Query: 229 TQEAGTERPFTGCYNKCYDEGMYVCIVC 312
TQ+ + + C CYD+ +++C++C
Sbjct: 250 TQKVQSSEFQSKCTVCCYDKDLWICLIC 277
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +2
Query: 350 LDVAGLHSMMFLLKKK*HFTVILVQVWCEPRCVVPSAPLIWATCLMTGQH 499
LD+AG+ + + L + +L+ + P ++P P+ CL G H
Sbjct: 561 LDIAGMKAQWYDLAAGLTYIRLLLPLKNFPESLIPYLPVYCDACLNLGTH 610
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 385 AKEKVTLHRDTSAGLVRTEVRCSKCAAHLGHVFDDGPAPTRKRFCINS-ASLDFIPAEER 561
A+++ T + S ++R +RC++CAA + + D P + S AS ++ P E+
Sbjct: 63 ARKEKTGEKYFSIDILRFYIRCTRCAAEITFITD----PKHADYAAESGASRNYEPWHEK 118
Query: 562 K 564
+
Sbjct: 119 R 119
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 348 IKFCFRAEEVLSTYYTYIH 292
IK C R E+++ T +++IH
Sbjct: 846 IKLCTRNEQIMKTIWSFIH 864
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +1
Query: 253 PFTGCYNKCYDEGMYVC 303
P C N CYD +Y C
Sbjct: 992 PLLACGNACYDSSIYGC 1008
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 262 GCYNKCYDEGMYVCIVCRQDLFSSKTKFDSGC--GWPA 369
GC++ ++ + + +LFS++ FD G GWP+
Sbjct: 182 GCHSYGHEVDRWTFGILIAELFSNQALFDDGSSEGWPS 219
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +1
Query: 82 SITVLRKVVNASANKSAQLKHPFTTALVWRAMEDKESLKKRLTPLQYHVTQ 234
+I + RK + SA +W+ + D ES+ K + L YH Q
Sbjct: 373 AIKLDRKFIQPYIRLSAAYLDENDNEKMWKVLNDAESVDKTDSDLYYHRAQ 423
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,439
Number of Sequences: 5004
Number of extensions: 58445
Number of successful extensions: 133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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