Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11l24
(665 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0024 + 13843517-13843620,13846424-13846580,13846667-13846816 108 4e-24
05_04_0264 + 19537582-19537919,19539670-19539826,19539939-195400... 106 2e-23
03_01_0257 + 1994645-1995061 32 0.47
05_06_0251 + 26687833-26688120,26689288-26689365,26690499-266905... 31 0.62
01_06_1596 - 38514278-38514346,38514547-38514705,38514776-385148... 31 0.82
05_01_0204 - 1461676-1462033,1462173-1462240 30 1.4
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 28 7.7
04_04_0075 - 22542486-22542882,22543181-22543362,22543452-225436... 28 7.7
>03_03_0024 + 13843517-13843620,13846424-13846580,13846667-13846816
Length = 136
Score = 108 bits (259), Expect = 4e-24
Identities = 54/124 (43%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Frame = +1
Query: 187 ESLKKRLTPLQYHVTQEAGTERPFTGCYNKCYDEGMYVCIVCRQDLFSSKTKFDSGCGWP 366
E + L+P Q+ + + GTE P TG YNK Y +G+Y C C L+ S TKFDSGCGWP
Sbjct: 15 EEWRAVLSPEQFRILRLKGTELPGTGEYNKFYGDGVYNCAGCGTPLYKSTTKFDSGCGWP 74
Query: 367 AFNDVLAKEKVTLHRDTSAGLVRTEVRCSKCAAHLGHVF--DDGPAPTRKRFCINSASLD 540
AF + L ++R R E+ C+ C HLGHVF + PT +R C+NS S+
Sbjct: 75 AFFEGLPG---AINRTPDPDGRRVEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIK 131
Query: 541 FIPA 552
F PA
Sbjct: 132 FTPA 135
>05_04_0264 +
19537582-19537919,19539670-19539826,19539939-19540092,
19540281-19540417
Length = 261
Score = 106 bits (254), Expect = 2e-23
Identities = 54/129 (41%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Frame = +1
Query: 178 EDKESLKKRLTPLQYHVTQEAGTERPFTGCYNKCYDEGMYVCIVCRQDLFSSKTKFDSGC 357
+ +E + L+P Q+ + + GTE P TG Y+K + EG+Y C C L+ S TKF+SGC
Sbjct: 90 KSEEEWEAILSPEQFRILRLKGTEYPGTGEYDKLFAEGVYECAGCGTPLYKSSTKFNSGC 149
Query: 358 GWPAFNDVLAKEKVTLHRDTSAGLVRTEVRCSKCAAHLGHVF--DDGPAPTRKRFCINSA 531
GWPAF + + R R E+ C+ C HLGHVF + PT +R C+NS
Sbjct: 150 GWPAFYEGFPG---AIARTPDPDGRRIEITCAACGGHLGHVFKGEGFNTPTDERHCVNSI 206
Query: 532 SLDFIPAEE 558
SL FIPA E
Sbjct: 207 SLKFIPASE 215
>03_01_0257 + 1994645-1995061
Length = 138
Score = 31.9 bits (69), Expect = 0.47
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 433 RTEVRCSKCAAHLGHVFDDGP 495
RT + C C LG+V+DDGP
Sbjct: 76 RTRISCDACGRLLGYVYDDGP 96
>05_06_0251 +
26687833-26688120,26689288-26689365,26690499-26690580,
26691155-26691195,26691973-26692143,26693586-26693813,
26694237-26694638
Length = 429
Score = 31.5 bits (68), Expect = 0.62
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Frame = -3
Query: 504 GGCWPVIKHVAQMSGALGTTHLGSHQTCTSITVKCHFFFS---KNIIEC 367
GGC P I A A G H CT + CHF S +N I C
Sbjct: 171 GGCTPKINTAATTMYAKLPMECGCHCCCTCFSANCHFIGSGVEENAIVC 219
>01_06_1596 -
38514278-38514346,38514547-38514705,38514776-38514898,
38514985-38515047,38515248-38515352,38515487-38515586,
38515716-38515786,38516329-38516385,38516830-38516907,
38516975-38517049,38517180-38517230,38517453-38517466,
38517516-38517616,38517703-38517764,38518346-38518372,
38518901-38519581
Length = 611
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 424 GLVRTEVRCSKCAAHLGHVFDDGPAPT 504
G +R E C +CAAH+ F P PT
Sbjct: 30 GRIRAEANCPRCAAHMSVQFSLQPLPT 56
>05_01_0204 - 1461676-1462033,1462173-1462240
Length = 141
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 433 RTEVRCSKCAAHLGHVFDDGPA 498
RT + C KC AH+G +DD A
Sbjct: 89 RTRLLCRKCGAHVGFAYDDRAA 110
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 440 SVRTKPALVSR*SVTFSLARTSLNAGQPHPESNFVFELKRSC 315
S+R K ALVS S + ++AR+S +G SN++ SC
Sbjct: 187 SIRPKKALVSSASSSPAIARSSGGSGAAMSRSNWLSRWMSSC 228
>04_04_0075 -
22542486-22542882,22543181-22543362,22543452-22543637,
22543959-22544057,22546198-22546314,22547739-22547855
Length = 365
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 328 SSKTKFDSGCGWPAFNDVLAKEKVTLHRDTSAGLVRTEVRCSKC 459
SS K +G P N V + VTL G++ E RC +C
Sbjct: 142 SSPEKVPNGPVQPLANGVRKEPPVTLVHKNFQGILTNETRCLRC 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,121,774
Number of Sequences: 37544
Number of extensions: 355777
Number of successful extensions: 758
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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