Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11l24
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   1.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.6  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    23   2.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.5  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   4.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.0  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -1

Query: 338 VFELKRSC-LHTIHTYIPSS 282
           VF L+R    H  HTYIPS+
Sbjct: 206 VFNLRRRLGYHLFHTYIPSA 225


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/63 (22%), Positives = 27/63 (42%)
 Frame = +2

Query: 401 HFTVILVQVWCEPRCVVPSAPLIWATCLMTGQHPPENVFV*IQHLWTSYPLKKGKINIFE 580
           H+ + L+ +      ++ +  +IW  C       P N+FV    +   + + K  I I+ 
Sbjct: 48  HYLLALLYILFTFLALLGNGLVIWIFCAAKSLRTPSNMFVVNLAICDFFMMIKTPIFIYN 107

Query: 581 SKN 589
           S N
Sbjct: 108 SFN 110


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 218 CSGVKRFFKDSLSSMALHTNAVVNGC 141
           C G K FF+ S++  A++     N C
Sbjct: 204 CEGCKGFFRRSITKNAVYQCKYGNNC 229


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 218 CSGVKRFFKDSLSSMALHTNAVVNGC 141
           C G K FF+ S++  A++     N C
Sbjct: 1   CEGCKGFFRRSITKNAVYQCKYGNNC 26


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 372 ECRPATSRIKFCFRAEEVLSTY 307
           EC+   S+ K CF  ++ L  Y
Sbjct: 436 ECKTCNSKTKCCFAQDDGLCPY 457


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 459 ALGTTHLGSHQTCTSITVKCHFFFSKNIIECRPATSRI 346
           A+GT    + Q    +  K   +FSKN+ +    T RI
Sbjct: 168 AIGTGKTATPQQAQEVHEKLRNWFSKNVNQTVAETVRI 205


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 624 YYKVYVTF*SLSFLDSNILI 565
           YY  YV F SLS+L    +I
Sbjct: 462 YYSHYVAFKSLSYLKKQPVI 481


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 283 DEGMYVCIVCRQD 321
           D GMY CIV R +
Sbjct: 393 DRGMYQCIVRRSE 405


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 283 DEGMYVCIVCRQD 321
           D GMY CIV R +
Sbjct: 393 DRGMYQCIVRRSE 405


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,217
Number of Sequences: 438
Number of extensions: 3909
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)