Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11l13
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    28   1.4  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    26   4.3  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    25   7.5  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 233 GGRAHSPSGVKWLLEPIDIYN 171
           GG  H P+ V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 201 LNTRWAVSSSTHLSNKKKPLTFSIS*KLTRICMQLE 308
           L T W   S  H      P+TFSI+ K+   C +L+
Sbjct: 253 LYTIWTPFSELHYFYCATPITFSIASKILSCCKKLK 288


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 447 YISLIVKFSRISRVLSVNFLTFSIAHKLTQI 355
           Y S+ + F   + ++SV+FLTF++  KLT +
Sbjct: 481 YSSVKLGFMLGTCIVSVSFLTFTVYAKLTNL 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,861
Number of Sequences: 5004
Number of extensions: 54398
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)