Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11l08
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    27   2.1  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   4.9  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    26   4.9  
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom...    25   8.6  

>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -1

Query: 369 ICIYLG*NSLLFQHSKT*V*VLCIIPCSP*HCHYDGAQYHF 247
           +C Y G +   ++ S   +   C     P  CHYDG    F
Sbjct: 54  VCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQF 94


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/51 (23%), Positives = 27/51 (52%)
 Frame = +3

Query: 261  RRRNDNVMDCRVLYIKPIPKFWNAEKVKSFIQDKCKSRTIPENIKFVLLFI 413
            + RN + M+ +++ ++P+P+  N E    F    CK     + + F++ F+
Sbjct: 1312 KNRNQH-MNAQIVTVRPLPELNNRELRLEFSVLPCKMYIDQDTLDFLIRFL 1361


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 447 FANSYICNLALMELENVEIDGKRLFINLD-TGIIFFFLYLFSDEMKPFFINNL 602
           F  +Y  N+  +E+EN+E  G   F N   + +I    YL   E +P F N L
Sbjct: 364 FLQTYSLNMLSIEMENIE--GSLYFGNAQLSNLICVNQYL--SEQRPVFFNRL 412


>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 357 DKCKSRTIPENIKFVLLFIEDNGD 428
           +KCK R++     +  LF +DN D
Sbjct: 91  EKCKGRSLSNATSYSTLFEDDNAD 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,309
Number of Sequences: 5004
Number of extensions: 54371
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)