Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11l05
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    27   1.3  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    26   3.1  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    25   5.4  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   5.4  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   5.4  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   7.2  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    25   9.5  
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       25   9.5  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   9.5  

>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = -3

Query: 378 LFTITQPIILCFFYCESNGPLRDLKEYVFVCSVA*GLSLGTSAKTPVICFTSFQSYFKWF 199
           L ++   I+   F  +S  PL   K  ++   +   L L T A  P +     + +F+WF
Sbjct: 159 LISVLHGILFMIFSAQSYKPLLYDKISIYGYFITVVLFLMTVASLPSVR----RKFFEWF 214

Query: 198 FVINDT----IIFLL 166
           FV++ T    IIFL+
Sbjct: 215 FVLHHTCSVLIIFLI 229


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 99  LCNKSTKTGGSKESFRESLFGISTE 173
           L + STKTGG++ SF+ S F ++ E
Sbjct: 549 LNSTSTKTGGARPSFQGSSFWMAPE 573


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 151 VYSASQQKDNGIIYDKKPFKITLEAGKTYHWCLCGRSKR 267
           VY   Q K  GI+  +KP+++     K    C  GRSKR
Sbjct: 260 VYRLCQVK--GILESRKPYRVDGVLTKVSLECFHGRSKR 296


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 344  FSTVNLMGLCVTLRNMSLCVPSHKGCLLERPQRHQ*YV 231
            +S ++LMG      +  +C+P H G +L  P+R+  +V
Sbjct: 1165 YSLMSLMGT-----SQGICIPRHAGQVLSTPRRNVEFV 1197


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 13  IFTT*SYSFLKMFLRNISRAIYNCSGRASYVTKVPK 120
           +FT  SY+ L+ ++   +  + +C  R +Y    PK
Sbjct: 213 LFTPFSYAILRSYIWRFAALLTSCCRRIAYTKTPPK 248


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 74  YTIVVEGHPM*QKYQNRRFQRIL*RKSIRHLNRKIMVSFMTKNHLK*LWKL 226
           Y ++ EGH    K +N   +  +  K IR +NR I+     +N+L  LW L
Sbjct: 437 YCVLDEGH----KIRNPDSEISISCKQIRTVNRIILSGTPIQNNLTELWNL 483


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 237 ICFTSFQSYFKWF 199
           ICF  F +YF WF
Sbjct: 276 ICFVQFFAYFGWF 288


>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 434 ASCISLFLCVPSQKGLSLVCLQLHSQ*SFVFSTV 333
           + C  LFL V +    +  C+  HSQ + + ST+
Sbjct: 82  SQCTPLFLAVYTSLRDAYACIHTHSQEAILLSTL 115


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 141 RILWNLRFWYFCYIGCPSTTIVYS 70
           RIL  LR+ Y C+   P+ ++VY+
Sbjct: 139 RILAILRYIYSCFTKLPAISLVYN 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,820
Number of Sequences: 5004
Number of extensions: 49527
Number of successful extensions: 128
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)