Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11l02
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.7  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    27   2.3  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   5.3  
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    25   7.0  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    25   9.3  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   9.3  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   9.3  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.3  

>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = +1

Query: 400 LGEMIFGAVAMNCRNVSLKIHVMDEP----RRLMCTKIFFVPT 516
           L +++FGA+ ++ +  + K+H++  P    R  M T++F + T
Sbjct: 79  LTDLMFGAIPISHKGTTTKLHILHPPNPATRSYMLTQLFQINT 121


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/74 (21%), Positives = 31/74 (41%)
 Frame = -2

Query: 239 LQSHSLNKSNRTCSEVIWQNLNFILYHARSSWPHSCSI*NHYGNN*SILNTQKNATVKFK 60
           L S  +  S    S +  + L  + +      PH  +I  HY     +++ +K   + + 
Sbjct: 120 LYSEEMYSSRNRLSNMELEVLRALNFDTHIVIPHKLAI--HYLQTLQLIDNKKLLQITWN 177

Query: 59  FTKTIQRTSVCILW 18
           F     RT +C+L+
Sbjct: 178 FLNDASRTRLCVLY 191


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 538 ERKNDRREAESCSYLRNESKPLNVPTMNEEGALSL 642
           E KN RR+ +    LR  +K  N  + NEE A ++
Sbjct: 19  EAKNRRRQFQEEDQLRRNNKSSNKLSQNEEDAKNM 53


>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 580 GSYSSLPRAYRFSFLLGLYVAM 515
           G++ SLP +YR +F+  L+ A+
Sbjct: 169 GTFMSLPESYRHTFIANLHNAL 190


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 580 GSYSSLPRAYRFSFLLGLYVA 518
           GS+ SL  A+ F  +LG+Y+A
Sbjct: 342 GSFESLSFAWGFGCMLGVYIA 362


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 274 QKVPAGKNDKPTFRQTDELPCIVEVTDGFSYL 369
           QK+P+G + +P     DEL  +    D FS L
Sbjct: 271 QKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 192 YLAEPKFHFISCSVQLATQLFHIKSLW 112
           Y    ++ F+SCS  +   L H+K ++
Sbjct: 470 YFGNSQYRFVSCSATIEDPLQHMKKIF 496


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 344 STMHGNSSVCLNVGLSFLPAGTFCMDEESNRIFLPLQS 231
           S  HGNSS C+ +  S LP        E   IFL L++
Sbjct: 254 SLFHGNSSHCM-LANSMLPPSIAFSKMEKAEIFLRLRA 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,813
Number of Sequences: 5004
Number of extensions: 53413
Number of successful extensions: 122
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)