Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11l02
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0445 - 29441472-29442152,29442244-29442357,29442959-294431...    28   5.5  
06_03_0947 + 26248378-26248494,26248600-26248764,26248843-262489...    28   7.2  
08_02_0745 - 20691765-20691815,20693143-20693202,20695244-20695858     27   9.6  
07_01_0149 - 1081805-1081821,1081860-1081941,1082412-1083425           27   9.6  
06_02_0364 + 15178583-15178881,15179652-15179723,15179853-151799...    27   9.6  

>01_06_0445 -
           29441472-29442152,29442244-29442357,29442959-29443186,
           29443284-29443586
          Length = 441

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -2

Query: 359 NPSVTSTMHGNSSVCLNVGLSFLPAGTFCMDEESNRIFLPLQSHSLNKSNRTCSEVI 189
           +P+V+   HGN +   N   S+L         ES    L  Q+H+ N +N  CSE +
Sbjct: 226 SPAVSLKHHGNGATRSNHSWSYLEGWMATKPWESR---LMEQTHTENSTNSRCSESV 279


>06_03_0947 +
           26248378-26248494,26248600-26248764,26248843-26248952,
           26249065-26249179,26249310-26249408,26249485-26249694,
           26249802-26250965
          Length = 659

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 223 KECDWRGRKILFDSSSIQKVPAGK 294
           K CD   R+++ DS S Q+V AGK
Sbjct: 238 KTCDPHSRRLVVDSDSPQEVEAGK 261


>08_02_0745 - 20691765-20691815,20693143-20693202,20695244-20695858
          Length = 241

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +1

Query: 340 VEVTDGFSYLYKGPSSDASVLGEMIFGAV--AMNCRNVSLKIHVMDEPRRLMCTKIFFVP 513
           V   DG +Y Y+ P+S A+ L +     V  +   R + ++   +D    L   K++F+ 
Sbjct: 15  VMTVDGTTYKYRPPASAAAALRDHPGYQVLESEEVRRLGMRARPLDADAPLKPGKLYFLV 74

Query: 514 TSRRISRGERK 546
              R++R  R+
Sbjct: 75  ELPRLARAPRR 85


>07_01_0149 - 1081805-1081821,1081860-1081941,1082412-1083425
          Length = 370

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 230 VTGEAGRFYLIPHPYKKYLPAKMISPHSGRQMSCH 334
           +TG+  RF + PHP+     A + +    R + CH
Sbjct: 126 ITGDHHRFPVPPHPHAYCTGAVLCAARDCRHLDCH 160


>06_02_0364 +
           15178583-15178881,15179652-15179723,15179853-15179917,
           15180890-15180934,15182493-15183170,15183376-15183410,
           15183647-15183736,15183896-15183985,15184164-15184262,
           15184938-15185013,15185473-15185588
          Length = 554

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -1

Query: 564 CLAPIVFPFSSAYTSRCRHEEYFRAH*SSRFVHDMDFQ*NIPAVHSDG 421
           C   IV+PF   ++ +C    YF    SSRF    DF+  +   H  G
Sbjct: 474 CCHVIVYPFLVPFSLQCEVTNYFSV--SSRFGSPDDFKKLVDEAHGLG 519


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,586,860
Number of Sequences: 37544
Number of extensions: 331725
Number of successful extensions: 802
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)