Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11l02
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099927-3|AAZ32795.1|  893|Caenorhabditis elegans Hypothetical ...    41   9e-04
AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical ...    41   9e-04
U80023-3|AAG24039.1|  324|Caenorhabditis elegans Serpentine rece...    30   1.2  
Z75532-5|CAD56651.1|  360|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z75532-4|CAA99811.1|  310|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF068713-10|AAC17801.1|  376|Caenorhabditis elegans Serpentine r...    27   8.6  

>AF099927-3|AAZ32795.1|  893|Caenorhabditis elegans Hypothetical
           protein T04C4.1b protein.
          Length = 893

 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 23/74 (31%), Positives = 36/74 (48%)
 Frame = +1

Query: 304 PTFRQTDELPCIVEVTDGFSYLYKGPSSDASVLGEMIFGAVAMNCRNVSLKIHVMDEPRR 483
           PT   T +    +     F +L K    D   L +MIFGAV     N S +IHV+++   
Sbjct: 131 PTRNGTHQNASSISACGEFQFLRK--RKDTRKLSQMIFGAVPNLKTNESFRIHVLEDEET 188

Query: 484 LMCTKIFFVPTSRR 525
           ++ +K F +P  R+
Sbjct: 189 ILVSKTFAIPKYRK 202


>AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical
           protein T04C4.1a protein.
          Length = 955

 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 23/74 (31%), Positives = 36/74 (48%)
 Frame = +1

Query: 304 PTFRQTDELPCIVEVTDGFSYLYKGPSSDASVLGEMIFGAVAMNCRNVSLKIHVMDEPRR 483
           PT   T +    +     F +L K    D   L +MIFGAV     N S +IHV+++   
Sbjct: 192 PTRNGTHQNASSISACGEFQFLRK--RKDTRKLSQMIFGAVPNLKTNESFRIHVLEDEET 249

Query: 484 LMCTKIFFVPTSRR 525
           ++ +K F +P  R+
Sbjct: 250 ILVSKTFAIPKYRK 263


>U80023-3|AAG24039.1|  324|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 30 protein.
          Length = 324

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 499 IFFVPTSRRISRGERKNDRREAESCSYLRNESKPLNVPTMNEEGALS 639
           I FVP  R +  G++K  +   E C  +R+ ++  ++   N    LS
Sbjct: 275 ILFVPHYRNVIIGKKKQPKPHPEMCGPIRSNTRTTSISVTNNSSHLS 321


>Z75532-5|CAD56651.1|  360|Caenorhabditis elegans Hypothetical
           protein C54G10.4b protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
 Frame = +1

Query: 304 PTFRQTDELPCIVEVTDGFSYLYKGPSS---DASVLGEMIFGAVAMNCRNV----SLKIH 462
           P +R T     ++   +GF  LYKG SS     S +  ++FG     CR +    S+  H
Sbjct: 39  PQYRGTFHCFKLIVQKEGFRGLYKGMSSPLLSLSAINAIVFGVHGGTCRQMEDPDSITSH 98

Query: 463 VMDEPRRLMCTKIFFVPTSR 522
            +      M   +   PT R
Sbjct: 99  FVGGCAAGMAQSVIAAPTER 118


>Z75532-4|CAA99811.1|  310|Caenorhabditis elegans Hypothetical
           protein C54G10.4a protein.
          Length = 310

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
 Frame = +1

Query: 304 PTFRQTDELPCIVEVTDGFSYLYKGPSS---DASVLGEMIFGAVAMNCRNV----SLKIH 462
           P +R T     ++   +GF  LYKG SS     S +  ++FG     CR +    S+  H
Sbjct: 39  PQYRGTFHCFKLIVQKEGFRGLYKGMSSPLLSLSAINAIVFGVHGGTCRQMEDPDSITSH 98

Query: 463 VMDEPRRLMCTKIFFVPTSR 522
            +      M   +   PT R
Sbjct: 99  FVGGCAAGMAQSVIAAPTER 118


>AF068713-10|AAC17801.1|  376|Caenorhabditis elegans Serpentine
           receptor, class w protein130 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 26  YRRLFFVLS**T*TLLLHFFVCLILTSCYHSDFI 127
           +  LF++L   T   + HFFVC +L+S Y +  I
Sbjct: 309 FEALFYMLL--TANTISHFFVCFVLSSQYRATLI 340


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,602,172
Number of Sequences: 27780
Number of extensions: 306563
Number of successful extensions: 685
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)