Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11k18
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0572 + 11667455-11670783,11672026-11672419                       81   8e-16
06_02_0263 - 13566621-13569875                                         64   7e-11
01_05_0134 - 18456233-18457572,18457636-18457863,18458134-18458293     30   1.9  
12_02_0412 - 18799217-18801061                                         29   2.5  
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188...    29   4.4  
02_02_0707 + 13144147-13144788,13145115-13148663                       28   5.8  

>02_02_0572 + 11667455-11670783,11672026-11672419
          Length = 1240

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 43/106 (40%), Positives = 62/106 (58%)
 Frame = +1

Query: 58  DEVTKLEHLSLVSKICTELDNHLGLNDKDLAEFIIDLADKNPTFETFKVALVENGAEFSD 237
           D + KLE+LSLVSK+C+EL+ H+G+ DK LAEFI +L   + +   F   L  NGA+  D
Sbjct: 13  DGLRKLEYLSLVSKVCSELETHIGVGDKVLAEFITELGRDSASVADFDTKLKANGADLPD 72

Query: 238 SFMTNLLRIIQHMKPVNTSTLIKNIAETESENPLAKKFPGLAIPND 375
            F+  LL II  + P  + +  +N +          KFPGL+ P+D
Sbjct: 73  YFVRTLLTIIHAILPPPSDS--RNPSSASQPAAGGSKFPGLSRPDD 116


>06_02_0263 - 13566621-13569875
          Length = 1084

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 31/77 (40%), Positives = 47/77 (61%)
 Frame = +1

Query: 58  DEVTKLEHLSLVSKICTELDNHLGLNDKDLAEFIIDLADKNPTFETFKVALVENGAEFSD 237
           D + +L  LSLVSK+C+EL+ HLG+ D+ LAEFI+DL   +P+   F   L  +GA+  D
Sbjct: 16  DGLRRLTQLSLVSKVCSELEAHLGVGDRVLAEFIVDLGRASPSVADFDAKLKAHGADLPD 75

Query: 238 SFMTNLLRIIQHMKPVN 288
            ++   L  + H  P +
Sbjct: 76  -YLARTLHTVIHAIPTH 91


>01_05_0134 - 18456233-18457572,18457636-18457863,18458134-18458293
          Length = 575

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/74 (29%), Positives = 30/74 (40%)
 Frame = -1

Query: 296 VDVFTGFMCCIIRSRFVMKESENSAPFSTNATLKVSNVGFLSAKSMMNSAKSLSFKPKWL 117
           +DV   FMCC+ R R    E +  A  S   T K+S   F +          +    KW+
Sbjct: 318 IDVIEHFMCCVSRMRRNEAEMDARASQSVPFT-KISAARFFTHVIFREVRAEIRKICKWV 376

Query: 116 SSSVHILDTSERCS 75
              V  LD + R S
Sbjct: 377 ILEVRQLDEARRYS 390


>12_02_0412 - 18799217-18801061
          Length = 614

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 269 CIIRSRFVMKESENSAPFSTNATLKVSNVGF 177
           C + S F +K S  S+P   + T+ ++NVGF
Sbjct: 480 CTMPSLFYLKLSTRSSPLEADQTVVITNVGF 510


>08_02_0918 -
           22617388-22617693,22617799-22617848,22618538-22618817,
           22619654-22620340,22622870-22622944,22623150-22623285,
           22624801-22625093,22625776-22626597
          Length = 882

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +1

Query: 40  KLILKMDEVTKLEHLSLVSKICTELDNHLGLNDKDL-AEFIIDLADKNPTFETFKVALVE 216
           K +  M +VTKL+        CTE       NDK L A+   D+  K    +   +A V 
Sbjct: 652 KFLAGMSQVTKLDFFCNCMLGCTEGAKEFEANDKFLNAQLTDDMFVKLHVVQLKNIACVR 711

Query: 217 NGAEFSDSFMTNLLRIIQHM 276
           N   F + F+ +  R+++ +
Sbjct: 712 NEMHFME-FVLSKARLLRKL 730


>02_02_0707 + 13144147-13144788,13145115-13148663
          Length = 1396

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
 Frame = -1

Query: 257  SRFVMKESENSAPFSTNATLKVSNVG-------FLSAKSMMNSAKSL---SFKPKWLSSS 108
            SRF   E + +A  + + T+K   +G       FL A S++N A++L   + +P+ ++SS
Sbjct: 915  SRFQPTEEQLAAQRNASETIKKCQIGTIFTESKFLQADSLLNLARALTQAAGRPQRITSS 974

Query: 107  VHILDTSERCSNLVTSSILS 48
            +    TS  C  L+ +  L+
Sbjct: 975  LDDESTSVFCLELLITVTLN 994


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.132    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,556,023
Number of Sequences: 37544
Number of extensions: 241159
Number of successful extensions: 452
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)