Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11k17
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 31 0.19
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce... 30 0.34
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 29 0.59
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 29 0.77
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 28 1.0
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 28 1.0
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 27 1.8
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 1.8
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p... 27 2.4
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 27 2.4
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 27 3.1
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 26 4.1
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 5.5
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 26 5.5
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 26 5.5
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 25 7.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 7.2
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 30.7 bits (66), Expect = 0.19
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 295 GTIVGSLVWGYLADTRGRRLMLLVSLMG 378
G I G +VW L++ GR+L LL+ + G
Sbjct: 182 GYIAGPIVWAPLSELSGRKLPLLIGMFG 209
>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 583
Score = 29.9 bits (64), Expect = 0.34
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 256 SSQQGILAAGPVVGTIVGSLVWGYLADTRGRRLM 357
S +G++ A +G I+G L++G+L D GR+ +
Sbjct: 82 SGIRGVVNAATNIGNIMGQLLFGFLGDFFGRKFV 115
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 29.1 bits (62), Expect = 0.59
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 253 TSSQQGILAAGPVVGTIVGSLVWGYLADTRGRRLMLLV 366
+SS+QG++ VG+ G L+ +AD G+RL ++V
Sbjct: 22 SSSRQGLITGMVNVGSFFGCLLSSPVADKIGKRLSIIV 59
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 28.7 bits (61), Expect = 0.77
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 292 VGTIVGSLVWGYLADTRGRR 351
+G +VG++VW ADT GRR
Sbjct: 129 LGLLVGAMVWSLSADTIGRR 148
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +1
Query: 253 TSSQQGILAAGPVVGTIVGSLVWGYLADTRGRRLMLL 363
+S++QG+L VG++ G ++ +AD G+RL ++
Sbjct: 58 SSARQGLLTGMVNVGSLFGCIISSPIADRFGKRLSII 94
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 319 KLNCQLWYRQLVQLLESLAGYWWSGVRRRWWV 224
K N Y+ L+ L + GY ++G+ RRW V
Sbjct: 254 KQNLSWGYKILIVLTSQMLGYGFAGLTRRWIV 285
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 216 YPGTHQRLRTPDHQ 257
YPG H L TPDHQ
Sbjct: 12 YPGAHPGLLTPDHQ 25
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 202 GYSSTI-LVPTSACELQTTSSQQGILAAGPVVGTIVGSLVWGYLADTRGRRLMLLVSL 372
G +ST+ ++ + L+ + QGI+ +G+ +G V GY AD R+ L+ +
Sbjct: 193 GMNSTVSILMSDIVPLKQRGTYQGIINVFFAIGSSLGGPVGGYFADQYTWRIGFLIQV 250
>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 539
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +1
Query: 289 VVGTIVGSLVWGYLADTRGRRLMLLVSLM 375
VVG +G LV L++ GRR++ LV+LM
Sbjct: 147 VVGFGIGPLVISPLSEMIGRRIVYLVTLM 175
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 622 CSMKKSTELLAGPVPP*ILVRAR-ICWSPIISPNYVSPWG 506
C + ST L + P+ L R + WSP++S SPWG
Sbjct: 126 CVAQMSTHLPSDPLE---LCRIHSVAWSPLVSLPSSSPWG 162
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/51 (21%), Positives = 29/51 (56%)
Frame = +1
Query: 217 ILVPTSACELQTTSSQQGILAAGPVVGTIVGSLVWGYLADTRGRRLMLLVS 369
+++ TS + T+ + + + +G ++G ++ G LAD GR+ ++ ++
Sbjct: 113 VVIGTSLGGHELTNGGKEFITSATSLGALLGGIIAGALADFFGRKPVIAIA 163
>SPBC1271.09 |||glycerophosphodiester
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 292 VGTIVGSLVWGYLADTRGRR 351
VGTIVG L +G+ +D GR+
Sbjct: 126 VGTIVGQLSFGWYSDRFGRK 145
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -3
Query: 248 WSSQALVGTRIVLL*PMHTNDIIDTPTKITNSMLYK-PKPALSTALSIVSSS 96
+S +L+GT + P H ++ TP + + + P P S+ LS +++S
Sbjct: 1165 YSLMSLMGTSQGICIPRHAGQVLSTPRRNVEFVNERVPTPEFSSLLSSLTNS 1216
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 268 GILAAGPVVGTIVGSLVWGYLADTRGRR 351
GI VGT +G L GY+A ++G R
Sbjct: 186 GIYILSTSVGTYLGPLAAGYIASSQGWR 213
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 253 TSSQQGILAAGPVVGTIVGSLVWGYLADTRGRRLMLL 363
+S++QG+L GT VG L+ L D G+R ++
Sbjct: 54 SSARQGLLVGMVNTGTTVGCLLSSPLGDRFGKRKCIM 90
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = +1
Query: 289 VVGTIVGSLVWGYLADTRGRRLMLLVSLMG 378
++G G ++W L++ GR+ +L+ ++G
Sbjct: 181 LLGYCSGPIIWAPLSELSGRKPPILIGMLG 210
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -3
Query: 194 TNDIIDTPTKITNSMLYKPKPALSTALSIVSSSL 93
++ I+ +PT T+S++ +S + SI+SSS+
Sbjct: 621 SSTILSSPTPSTSSLMISSSSIISGSSSILSSSI 654
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,253
Number of Sequences: 5004
Number of extensions: 53714
Number of successful extensions: 164
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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