Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11k16
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 31 0.18
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8... 27 2.2
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 27 3.9
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 27 3.9
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 27 3.9
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 6.8
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 26 6.8
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 26 6.8
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 26 6.8
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo... 25 9.0
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 31.1 bits (67), Expect = 0.18
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 131 ASYNSRRCQHRCRL-GRQIRSPADHAVRSGSGKTLRAGPAHRWDAP 265
A Y++ + Q L G QIRS + A SG+G TL G A R+ P
Sbjct: 187 ADYSTMKLQQLLALSGNQIRSSSSKAKISGTGITLNLGAASRFLMP 232
>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
Cut8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3
Query: 603 VKTLAYDTLDANKRFFDNDISKVPRQALTVG 695
++TL+Y + K FD DISK RQ L VG
Sbjct: 1 METLSYSQIKKRKADFDEDISKRARQ-LPVG 30
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 358 RPTYS-SMLKVVTYLKDNFPSLWNSINRLYMPRGVPPV 248
R YS S++++ LK ++ L + + + PRG PPV
Sbjct: 410 RSLYSPSLMQMQQSLKSDYEGLGRTFDPRFAPRGSPPV 447
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 26.6 bits (56), Expect = 3.9
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = -2
Query: 317 ER*LPFLVELYQPFVHAEGRPTGGQAQHEVSSRTRSELRDPLE-NESGGPVGNDAGIFEN 141
E+ L +V+L Q +HA PT G+ + + LRD N GP G + +
Sbjct: 162 EKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIK 221
Query: 140 YKTHSSGLLSHVS 102
++ + L +S
Sbjct: 222 FRPGLAQFLQKIS 234
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +2
Query: 164 CRLGRQIRSPADHAVRSGSGKTLRAGPAHRWDAPRHVQTVD 286
C R R PA+ + S G H WD H++++D
Sbjct: 185 CNRVRSARRPANSSKESLLASFHETGKVHIWDIAPHLRSLD 225
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 390 YMWNEFFKHIDIEPSNAHVLDGNASDLV 473
+ +N+ K+ D+ +AHV+ A+DLV
Sbjct: 1015 HRYNDIVKYADLTTQDAHVIKKIAADLV 1042
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.8 bits (54), Expect = 6.8
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = -3
Query: 277 LYMPRGVPPVGRPSTKCLPGPGANCVIRWRTNLAAQSATMLASSRIIRRIVRDYFHTLAV 98
+Y P + PS LP +N V+ + +++ + +S+ ++ V DYF+T
Sbjct: 178 VYEPDAIVTTTDPS---LPLLDSNAVVECFNSYQSEADPVSNASKALKH-VNDYFNTSYA 233
Query: 97 TISYYG 80
YYG
Sbjct: 234 PAEYYG 239
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 160 MLASSRIIRRIVRDYFHT-LAVTISYY 83
++A RI RRI +DY H L+ I Y+
Sbjct: 165 IIAGERIARRIRQDYLHAILSQNIGYF 191
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.8 bits (54), Expect = 6.8
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +2
Query: 62 WNPFVFSVIRYCHR*RVKVIPNYASYNSRRCQHRCRLGRQIRSPADHAVRSGSGKTL 232
+N + +VI+ C R KV+ +A+ C H R+G+ + A S SGK +
Sbjct: 940 FNEELGAVIQVCDRDIAKVLELFAANGLSTCVH--RIGKVLSGQAQTISFSRSGKII 994
>SPCC191.09c |gst1||glutathione S-transferase
Gst1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 229
Score = 25.4 bits (53), Expect = 9.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 333 FNMDEYVGLPRDHPESY 383
++ + + LPRDHPE Y
Sbjct: 82 YDTERKISLPRDHPEYY 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,152,461
Number of Sequences: 5004
Number of extensions: 66503
Number of successful extensions: 206
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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