Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11k14
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   4.3  
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.7  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.5  
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c...    25   9.9  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   9.9  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   9.9  

>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 450 NFQSKRDQLFLKSKRIRL*IQ*STL*HDRLVPRYRKRV--VGVSSHNAH 590
           + ++KRD+     KR  L I+ S   HDRLV RY  R   +  S +N H
Sbjct: 335 HLRNKRDEAVHAEKRRLLDIRGSI--HDRLVCRYENRYNKLHASEYNHH 381


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = +3

Query: 96  VTSYKVP--HPKLFLSFTPLNYVI 161
           +T +++P  +PKLF SFTP++  +
Sbjct: 266 ITPFELPFVNPKLFASFTPMSVAL 289


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 558 VSDNAEPTCRVIEWITVFITGFFYSL 481
           V++N + T R + WI V + GFF  L
Sbjct: 228 VAENPKLTWRWLYWIDVIVGGFFIIL 253


>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 86  TFLSYQL*SATSKTVSQFHASKLCNYSEVDP 178
           TF S    +A S T SQF    +CN S + P
Sbjct: 197 TFKSKHSLNAYSLTASQFSGHTVCNESSLKP 227


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -1

Query: 473 LVPFRLKVAENSKQLIMTNETETCFNCQNLIGMFSKN*IRH*NFLKLSRN 324
           L P+ L  +EN +QLI +N     F   N+   F +  IR    +K SRN
Sbjct: 197 LSPWLLGKSENDRQLIPSNPKGALFVGHNV--SFDRQRIREEYNIKSSRN 244


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 561 RVSDNAEPTCRVIEWITVFITGFFYSLKKVGPF 463
           +++ N +P  ++ E  TV++  FF+ L  +G F
Sbjct: 108 KLASNWKPRYQISERNTVYLNAFFHFLDFIGMF 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,638
Number of Sequences: 5004
Number of extensions: 47898
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)