Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11k09
         (648 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ...    31   3.5  
AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein.             31   3.5  
AY113189-1|AAM77920.1|  755|Homo sapiens OCT-1 protein protein.        30   6.2  
AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17 pr...    30   6.2  
AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17 pr...    30   6.2  

>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
             marker CA125 protein.
          Length = 22152

 Score = 31.1 bits (67), Expect = 3.5
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = -1

Query: 192   PVEDSIGSFTTTAGAATIVLEP---TDTSSLITSVALAPVEDSITSFTTTAGAATIVLEP 22
             PV  +  SF+ ++  AT V+     T+ SS + +       + +TS  T++GAAT    P
Sbjct: 11702 PVSRTTSSFSHSSPDATPVMATSPRTEASSAVLTTISPGAPEMVTSQITSSGAATSTTVP 11761

Query: 21    TDTSS 7
             T T S
Sbjct: 11762 TLTHS 11766


>AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein.
          Length = 6995

 Score = 31.1 bits (67), Expect = 3.5
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = -1

Query: 192  PVEDSIGSFTTTAGAATIVLEP---TDTSSLITSVALAPVEDSITSFTTTAGAATIVLEP 22
            PV  +  SF+ ++  AT V+     T+ SS + +       + +TS  T++GAAT    P
Sbjct: 3406 PVSRTTSSFSHSSPDATPVMATSPRTEASSAVLTTISPGAPEMVTSQITSSGAATSTTVP 3465

Query: 21   TDTSS 7
            T T S
Sbjct: 3466 TLTHS 3470


>AY113189-1|AAM77920.1|  755|Homo sapiens OCT-1 protein protein.
          Length = 755

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = -1

Query: 213 ITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAA-T 37
           +TS A+  +  +  S TT+   AT++      SS +TS +L+P   +  S +  + A+ T
Sbjct: 496 LTSAAVTNLSVTGTSDTTSNNTATVISTAPPASSAVTSPSLSPSPSASASTSEASSASET 555

Query: 36  IVLEPTDT 13
             ++ T T
Sbjct: 556 STIQTTST 563


>AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17
           protein.
          Length = 4262

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 24/74 (32%), Positives = 40/74 (54%)
 Frame = -1

Query: 228 NASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTA 49
           + + L TS  +    ++  S TTT G +  +  P++ S L+TS+   PV  SIT   T+ 
Sbjct: 768 STTPLDTSTHITTSTEASCSPTTTEGTSMPISTPSEGSPLLTSI---PV--SITP-VTSP 821

Query: 48  GAATIVLEPTDTSS 7
            A+T+   P D++S
Sbjct: 822 EASTLSTTPVDSNS 835


>AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17
           protein.
          Length = 4493

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 24/74 (32%), Positives = 40/74 (54%)
 Frame = -1

Query: 228 NASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTA 49
           + + L TS  +    ++  S TTT G +  +  P++ S L+TS+   PV  SIT   T+ 
Sbjct: 768 STTPLDTSTHITTSTEASCSPTTTEGTSMPISTPSEGSPLLTSI---PV--SITP-VTSP 821

Query: 48  GAATIVLEPTDTSS 7
            A+T+   P D++S
Sbjct: 822 EASTLSTTPVDSNS 835


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,479,129
Number of Sequences: 237096
Number of extensions: 1174300
Number of successful extensions: 2681
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2664
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)