Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11k06
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    31   0.16 
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom...    29   0.83 
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   4.4  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   5.9  
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    26   5.9  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   7.8  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   7.8  

>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +3

Query: 501 KVPKSRRILLYYCGFNY*NKTCKKMFV-LQKCVVVYIGCSVSLDGAVRI 644
           K+ K+ RI++Y C  ++   + +  ++ L K ++  + C VSL GA+RI
Sbjct: 88  KLLKTLRIVIYICTSDHWTHSLRFYYIELSKILLYLLICGVSLYGAIRI 136


>SPAC1296.04 |mug65||spore wall assembly protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 327 LATFLYKNDINDYLICLNLKIRILFFILIYFSCSKMTEILS*ELKNASTCTRQ 169
           LATFL    I++ +   N K  +L   +   SC K  E+L+  L  A   T Q
Sbjct: 185 LATFLASASIDEKVYVKNCKKDLLKNFVFEHSCRKANELLNASLTAAEASTSQ 237


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 553 KTKRVRKCLCYKNVLWCTLDAVFR 624
           K  R +KC  YKN + C L +V++
Sbjct: 896 KEMREQKCFSYKNFISCVLISVYQ 919


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 491 GTFITLPHVVCYLWQFFHH*HFIRRK 414
           G+F    + +C+ ++FF   H I RK
Sbjct: 508 GSFFAAAYAICHYYRFFRTSHTISRK 533


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 150 INKYLKQQYNVRLACHTQLLSYKTISTK*FTSLLVNFITNSNYS 19
           +NKY+      R      +LSYK  S + F  LL     ++N S
Sbjct: 3   LNKYISNYSRTRAVSCAPVLSYKKCSYRNFNGLLQARFQSNNLS 46


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -1

Query: 511 FGTFFFVALLLHFHMLFVICGNFFTTNTSSDVNVSEYLHK 392
           F  F F+   LHF+  F +C +    +      +S  LH+
Sbjct: 117 FSFFSFLFTSLHFNFFFRLCRHKHLLDIPDQTTLSSLLHR 156


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 567 KKMFVLQKCVVVYIGCSVSLDGAVRIVADQASSPCC 674
           +K    + CV +  GCS  +     +   QA+ PCC
Sbjct: 70  QKQIFCKLCVDICNGCSTPICEFNAVSNSQANHPCC 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,977
Number of Sequences: 5004
Number of extensions: 58219
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)