Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11k06
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41279-17|AAK31427.1|  179|Caenorhabditis elegans Hypothetical p...    31   0.58 
U41279-16|AAK31416.1|  179|Caenorhabditis elegans Hypothetical p...    31   0.58 
U40417-9|AAA81417.2|  120|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z99279-1|CAB16496.4|  598|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot...    28   5.4  

>U41279-17|AAK31427.1|  179|Caenorhabditis elegans Hypothetical
           protein C17C3.13 protein.
          Length = 179

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 484 LLHFHMLFVICGNF--FTTNTSSDVNVSEYLHKIE 386
           L+H  +LF+ICG F     +T+  +N+S  L  +E
Sbjct: 34  LMHIELLFIICGTFREMRDSTTRSINISSLLKVLE 68


>U41279-16|AAK31416.1|  179|Caenorhabditis elegans Hypothetical
           protein C17C3.2 protein.
          Length = 179

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 484 LLHFHMLFVICGNF--FTTNTSSDVNVSEYLHKIE 386
           L+H  +LF+ICG F     +T+  +N+S  L  +E
Sbjct: 34  LMHIELLFIICGTFREMRDSTTRSINISSLLKVLE 68


>U40417-9|AAA81417.2|  120|Caenorhabditis elegans Hypothetical
           protein T08A9.13 protein.
          Length = 120

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 423 DEVLVVKKLPQITNNMWKCNKSATKKKVPKS 515
           D+  V+KK+P +T    K N++ TKKK+ K+
Sbjct: 63  DQYDVLKKIPTLTEQERKENETLTKKKIAKA 93


>Z99279-1|CAB16496.4|  598|Caenorhabditis elegans Hypothetical
           protein Y57G11A.1a protein.
          Length = 598

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 469 CGSVIKVPRKRKCQNHGGYYCIIVVLITKTKRVRKCL 579
           C   ++V +  +CQ  G  YC +   + +  R RK L
Sbjct: 538 CKQALRVEKAHRCQQSGDLYCRVHFKLMEENRSRKML 574


>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
            T06E4.3b protein.
          Length = 2514

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 339  ENLGWFRYFPIYAVLSSILCRYSETFTSDEVLVVKKL 449
            E++GW  ++P YAVL+  +    E  T     ++K+L
Sbjct: 1996 EHIGWRAFYPAYAVLARHIDHQDEEVTRTIKQIMKQL 2032


>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
            T06E4.3a protein.
          Length = 2531

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 339  ENLGWFRYFPIYAVLSSILCRYSETFTSDEVLVVKKL 449
            E++GW  ++P YAVL+  +    E  T     ++K+L
Sbjct: 2013 EHIGWRAFYPAYAVLARHIDHQDEEVTRTIKQIMKQL 2049


>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
            protein.
          Length = 2514

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 339  ENLGWFRYFPIYAVLSSILCRYSETFTSDEVLVVKKL 449
            E++GW  ++P YAVL+  +    E  T     ++K+L
Sbjct: 1996 EHIGWRAFYPAYAVLARHIDHQDEEVTRTIKQIMKQL 2032


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,744,250
Number of Sequences: 27780
Number of extensions: 336403
Number of successful extensions: 826
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)