Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11k06
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.89 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.2  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    22   4.8  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    22   4.8  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    22   4.8  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    22   4.8  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    22   4.8  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    22   4.8  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    22   4.8  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    22   4.8  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   4.8  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   4.8  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    21   8.3  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
 Frame = -1

Query: 532 YNNILRDF-GTFFFVALLLHFHMLFVICG-----NFFTTNTSSDV 416
           Y  ++ D  G +FF+   +HF  LF   G      FFT  TS+++
Sbjct: 443 YQKMVADVVGDYFFICPSIHFAQLFADRGMKVYYYFFTQRTSTNL 487


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
 Frame = -1

Query: 532 YNNILRDF-GTFFFVALLLHFHMLFVICG-----NFFTTNTSSD 419
           Y  ++ D  G +FF+   +HF  LF   G      FFT  TS++
Sbjct: 443 YQKMVADVVGDYFFICPSIHFAQLFADRGMKVYYYFFTQRTSTN 486


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 198 LKNASTCTRQCNYMHRINKYLKQQYN 121
           + N ++ +   NY +  N Y K  YN
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNKHNYN 107


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 198 LKNASTCTRQCNYMHRINKYLKQQYN 121
           + N ++ +   NY +  N Y K  YN
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNKHNYN 107


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 198 LKNASTCTRQCNYMHRINKYLKQQYN 121
           + N ++ +   NY +  N Y K  YN
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNKHNYN 107


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 198 LKNASTCTRQCNYMHRINKYLKQQYN 121
           + N ++ +   NY +  N Y K  YN
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNKHNYN 107


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 198 LKNASTCTRQCNYMHRINKYLKQQYN 121
           + N ++ +   NY +  N Y K  YN
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNKHNYN 107


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 198 LKNASTCTRQCNYMHRINKYLKQQYN 121
           + N ++ +   NY +  N Y K  YN
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNKHNYN 107


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 198 LKNASTCTRQCNYMHRINKYLKQQYN 121
           + N ++ +   NY +  N Y K  YN
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNKHNYN 107


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 198 LKNASTCTRQCNYMHRINKYLKQQYN 121
           + N ++ +   NY +  N Y K  YN
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNKHNYN 107


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 198 LKNASTCTRQCNYMHRINKYLKQQYN 121
           + N ++ +   NY +  N Y K  YN
Sbjct: 315 ISNNNSLSNNYNYNNNYNNYNKHNYN 340


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 198 LKNASTCTRQCNYMHRINKYLKQQYN 121
           + N ++ +   NY +  N Y K  YN
Sbjct: 315 ISNNNSLSNNYNYNNNYNNYNKHNYN 340


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -2

Query: 198 LKNASTCTRQCNYMHRINKYLKQQYN 121
           + N +  +   NY +  N Y K  YN
Sbjct: 82  ISNNNPLSNNYNYNNNYNNYNKHNYN 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,362
Number of Sequences: 438
Number of extensions: 4311
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)