Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11j20
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 37 0.002
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 33 0.024
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 32 0.055
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 31 0.17
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 28 0.89
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 1.6
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 27 2.1
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 27 2.7
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 26 3.6
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 4.8
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces... 25 6.3
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar... 25 8.3
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +3
Query: 84 LTVCSVCSDAYHALCHAPQIPDRL--KAWDQWECNNCLESR---PTVIGSPA 224
+ C C+ +H LCH P I D L +W C++C+ + P V G+ A
Sbjct: 249 IVFCDGCNTPFHQLCHEPYISDELLDSPNGEWFCDDCIRRKKQAPLVTGTTA 300
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 33.5 bits (73), Expect = 0.024
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 78 GVLTVCSVCSDAYHALCHAPQIPDRLKAWDQWECNNC 188
G C C +++H C P I ++ D W CN C
Sbjct: 273 GNFLCCETCPNSFHFTCIDPPIEEKNLPDDAWYCNEC 309
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 32.3 bits (70), Expect = 0.055
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +3
Query: 84 LTVCSVCSDAYHALCHAPQIPD-RLKAWD-QWECNNC 188
+ C C+ YH LCH P I D ++ D +W C C
Sbjct: 207 IVFCDGCNSPYHQLCHHPPIDDATVQDVDAEWFCMKC 243
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 30.7 bits (66), Expect = 0.17
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +3
Query: 84 LTVCSVCSDAYHALC-HAPQIPDRLKAWDQWECNNCLES 197
L C +C YH C AP P W CN+C+ S
Sbjct: 309 LVTCCICQSNYHYACVEAPFAP--FSDIHYWTCNSCIPS 345
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 28.3 bits (60), Expect = 0.89
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 249 CSQSFWVLWRVTLSQLVEIQGNYCIPIDP--KLSIYLVSEVHG 127
C SFW T + I C+ + K++IYL SEVHG
Sbjct: 4 CVHSFWATAVDTATSCHFISSENCLVLLQALKINIYLCSEVHG 46
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 198 RPTVIGSPAIIPRSFDYSGQNSPNVDPFLKPHELDRAPSKLSMDTPIDPSI--PDITHWN 371
RPTV+ + +I +GQ+ D L+P +L + P M+ ++ + D+ H N
Sbjct: 191 RPTVLENAKVINEQEGITGQSFERGDAQLQPVKLQQMPMDKEMEKIVEMDLEEEDMMHQN 250
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 81 VLTVCSVCSDAYHALC-HAPQIPDRLKAWDQWECNNCL 191
VL +C C DAYH C + +P +++ C NC+
Sbjct: 136 VLLLCDGCDDAYHTYCLNMDAVP-----IEEFYCPNCV 168
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 78 GVLTVCSVCSDAYHALCHAPQIPDRLKAWDQWECNNC 188
GV+ C +C + YHA C +L+ +++ C C
Sbjct: 1107 GVMIECEICHEWYHAKC-LKMSKKKLRQDEKFTCPIC 1142
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = -3
Query: 321 IIWMV--LYLVHVASRKDQHLVNFVHCSQSFWVLWRVTLSQLVEIQGNYCIPIDPKLSIY 148
++W++ LY ++VA V+F++C +F+ ++ + + + +PI P +
Sbjct: 134 MVWVIRILYYIYVA-------VSFIYCVMAFFTIFNNHVYTIETASPAWILPIFPPMICG 186
Query: 147 LVSEVHGKVHDKHQSKH 97
+++ HQ K+
Sbjct: 187 VIAGAVNSTQPAHQLKN 203
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -3
Query: 543 VSPQYDIMPGQVQEVTPDPLQCQHDMPY 460
+SP++++ PGQ+ E++P + D+ Y
Sbjct: 287 LSPKFEVAPGQIVELSPKGYRFLVDLFY 314
>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 257
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 291 HELDRAPSKLSMDTPIDPSIPDITHWNTDDVFEYFSKHHPEAAPILRDQEFDGQ 452
H L+ +P KL D+P ++P +N + F F + ++A D F G+
Sbjct: 88 HNLESSPFKLQCDSPY--NVPPENMFNQNPDFANFFQAMLQSAKEGSDTNFQGE 139
>SPAC24C9.09 |||mitochondrial threonine-tRNA
ligase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 43 M*LFIENFNGYWVFSLSAVFALML 114
M + IE+ NG+W F LS A++L
Sbjct: 341 MGILIEHLNGHWPFWLSPRHAVIL 364
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,206
Number of Sequences: 5004
Number of extensions: 59499
Number of successful extensions: 155
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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