Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11j18
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...   126   2e-30
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    25   5.4  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   7.2  

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score =  126 bits (304), Expect = 2e-30
 Identities = 70/181 (38%), Positives = 89/181 (49%), Gaps = 2/181 (1%)
 Frame = +2

Query: 2   NXGSXXXXXXXXXXXTGXFLTIYYTANIXIAFYRVNYICRNVNYG*IIRTLHANGASFFF 181
           N GS            G  L  +Y  N+ +AF  V  I R+VNYG ++R  HANGASFFF
Sbjct: 31  NFGSLLACVLVIQIVIGILLACFYIPNMDLAFLSVERIVRDVNYGFLLRAFHANGASFFF 90

Query: 182 XCIYLHIGRGIYYESFNLKXV*L--XXXXXXXXXXXXXXXXYVLP*GQIXFWGATVITNL 355
             +YLHIGRG+YY S+                         Y LP  Q+ FWGATVITNL
Sbjct: 91  IFLYLHIGRGLYYGSYKYPRTMTWNIGVIIFLLTIITAFLGYCLPANQMSFWGATVITNL 150

Query: 356 LAAIPYLGTILVN*I*GGFAVDXATLTRFYXXXXXXXXXXXXXXXXXXXXXXQTGSNNPL 535
           L+A+P++G  LV+ + GGF+V   TL RF+                        GS+NPL
Sbjct: 151 LSAVPFIGDDLVHLLWGGFSVSNPTLNRFFSLHYLMPFVIAALSVMHLIALHTNGSSNPL 210

Query: 536 G 538
           G
Sbjct: 211 G 211


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +1

Query: 277 NSNCFHRLCLTLRSNXFLGGNRNYKSISCNPLFR 378
           N  C+H++C +     F  G     +  CN + R
Sbjct: 31  NPECYHKMCESCVDRIFTTGPAQCPTPGCNKILR 64


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 253 WNYNFIYTNSNCFHRLCLTLRSNXFLGGN 339
           WN      +SN  +RLC TL  + FL GN
Sbjct: 133 WNRLLQLDSSNLEYRLCFTL--SAFLSGN 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,482,545
Number of Sequences: 5004
Number of extensions: 23683
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)