Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11j14
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   1.8  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    27   1.8  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    27   3.2  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   5.6  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   7.5  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   9.9  

>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 592 FITTQSSKILHIYYWAYWQHSKRNSDHFN 506
           F+TTQ++ IL   + A+W +S  NS   N
Sbjct: 904 FVTTQATSILIDLWVAFWTNSSVNSPDVN 932


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 435 GGAYVFVSPSGIVKSQNNILGLLWNTASPTSQAATSKEVV 316
           GG  +FV    +   Q+ I   L++  SPT  AA  K ++
Sbjct: 351 GGDLIFVPTVSLTIIQSEIRNRLYSVKSPTQMAAREKIII 390


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +2

Query: 164 CISFCYTAQPEHRNSQSHSDTLENLAWASA 253
           C+S  Y   PE +   +H+D +++  W ++
Sbjct: 124 CVSVDYRLAPESKFPVAHNDAIDSFKWVAS 153


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +2

Query: 200 RNSQSHSDTLENLAWASAQFHCFYSTSGAQGDKTPILGKTTS--LEVAACDVGDAVFHSK 373
           +N  + +D  +NL  A  +F CF        D      K +    E+ + +VG  V +S 
Sbjct: 717 KNQLNGNDETQNLVLALNKFGCFAKEMVCLRDVNDWNIKLSEKLCEICSLEVGPIVCYSS 776

Query: 374 PKILF 388
            K+LF
Sbjct: 777 LKVLF 781


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/57 (24%), Positives = 22/57 (38%)
 Frame = +2

Query: 179 YTAQPEHRNSQSHSDTLENLAWASAQFHCFYSTSGAQGDKTPILGKTTSLEVAACDV 349
           Y   P     +S +DT       +      YSTSG+    TP   + T+   +  D+
Sbjct: 134 YEYHPSSERHKSTNDTWSTNLPTNPTTTAIYSTSGSSNITTPYSNRITNSNTSVNDI 190


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 523 NSDHFNVRPHFLCCYCYF 470
           +  HF+ R   L C+CY+
Sbjct: 582 DDSHFSFRSQILICWCYY 599


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,294
Number of Sequences: 5004
Number of extensions: 57839
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)