Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11j14
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0447 - 3377666-3378673 32 0.36
07_01_0446 - 3371829-3372132,3374691-3375673 32 0.48
10_02_0089 - 5138048-5138561,5138864-5139105,5139712-5140079,514... 31 0.63
12_01_0951 - 9471391-9471597,9471857-9471966,9473173-9473278,947... 30 1.5
01_07_0034 - 40625755-40626268,40626358-40626599,40627034-406274... 30 1.5
06_03_0570 - 22363197-22363588,22363755-22366782 29 3.3
08_02_1369 - 26445725-26445812,26446443-26446529,26446720-264469... 29 4.4
01_01_0103 - 773727-774737,774797-774813,774852-775078,777465-77... 29 4.4
01_07_0033 - 40619145-40619658,40619761-40620002,40620178-406205... 28 5.9
09_02_0027 + 3105963-3106276,3106298-3107027,3107069-3107134,310... 28 7.7
03_06_0249 + 32638112-32639140 28 7.7
>07_01_0447 - 3377666-3378673
Length = 335
Score = 32.3 bits (70), Expect = 0.36
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = +2
Query: 59 ILIY*HK*TIFYKMIELSAKLTTGTVYLAGEAIECCISFCYTAQPEHRNSQSHSDTLENL 238
+L+Y H EL G + LAGE +S Y PEHR ++ D + L
Sbjct: 82 VLVYFHGGGFCIASFELP-NFHAGALRLAGELPAVVLSADYRLAPEHRLPAAYEDAVAVL 140
Query: 239 AWASAQ 256
+W Q
Sbjct: 141 SWLRGQ 146
>07_01_0446 - 3371829-3372132,3374691-3375673
Length = 428
Score = 31.9 bits (69), Expect = 0.48
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +2
Query: 128 GTVYLAGEAIECCISFCYTAQPEHRNSQSHSDTLENLAWASAQ 256
G + LA E +SF Y PEHR +H D L W Q
Sbjct: 105 GCLRLAAELPAVVLSFDYRLAPEHRLPAAHEDAAAALIWLRDQ 147
>10_02_0089 -
5138048-5138561,5138864-5139105,5139712-5140079,
5140862-5140943
Length = 401
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -2
Query: 553 YWAYWQHSKRNSDHFNVRPH-FLCCYCYF 470
YW YW ++ +DHF V PH F C+ YF
Sbjct: 123 YWPYWNRTE-GADHFFVVPHDFAACF-YF 149
>12_01_0951 -
9471391-9471597,9471857-9471966,9473173-9473278,
9474719-9475060,9475598-9475647,9476745-9477717
Length = 595
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 65 IY*HK*TIFYKMIELSAKLTTGTVYLAGEAIEC 163
IY K T +Y M+ LSA ++ G + L G+A EC
Sbjct: 523 IYIFKGTRWYSMLGLSAVISAGGLPLQGQACEC 555
>01_07_0034 -
40625755-40626268,40626358-40626599,40627034-40627422,
40628119-40628227
Length = 417
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 550 WAYWQHSKRNSDHFNVRPH-FLCCYCY 473
W YW S+ +DHF V PH F C+ Y
Sbjct: 140 WPYWNRSE-GADHFFVTPHDFGACFHY 165
>06_03_0570 - 22363197-22363588,22363755-22366782
Length = 1139
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +1
Query: 226 IRKSSLGFSTVPLLLFNVRGSR*QNPNIRENNFFGS 333
+RK+ +G +P LFN S Q N+ ENNFFGS
Sbjct: 257 LRKNHIG-GEIPPALFN--SSSLQAINLAENNFFGS 289
>08_02_1369 -
26445725-26445812,26446443-26446529,26446720-26446928,
26447501-26447583,26447672-26447720,26447800-26447959,
26448795-26448891,26449424-26449535,26449637-26449702,
26450135-26450206,26450413-26450487,26451139-26451266,
26451551-26451772,26452084-26452355,26452447-26452543,
26452633-26452738,26454834-26455220
Length = 769
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +2
Query: 158 ECCISFC-YTAQPEHRNSQSHSDTLENLAWASAQFHCFYSTSGAQGDKTPILGKTTSLEV 334
+C C YT + NS H+ + +A Q C TSGA+GD +L E+
Sbjct: 478 DCITGSCLYTLGGDDHNSVGHTQKINAMAVNKWQ-SCLVVTSGAKGDGKLLLWNALRGEL 536
Query: 335 AA 340
A+
Sbjct: 537 AS 538
>01_01_0103 -
773727-774737,774797-774813,774852-775078,777465-778237
Length = 675
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -2
Query: 661 HSQWCLHFPLLRKWISRVKFLSSFITTQSSKILHIYY 551
H W L + W+ V IT SSK L++Y+
Sbjct: 131 HDSWDLGLDDMITWVGFVNCSQELITNSSSKYLYVYH 167
>01_07_0033 -
40619145-40619658,40619761-40620002,40620178-40620566,
40621586-40621688
Length = 415
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 553 YWAYWQHSKRNSDHFNVRPH-FLCCYCY 473
+W YW + +DHF V PH F C+ Y
Sbjct: 137 HWPYWNRTD-GADHFFVVPHDFGACFHY 163
>09_02_0027 +
3105963-3106276,3106298-3107027,3107069-3107134,
3107192-3107324,3108985-3109088
Length = 448
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = +2
Query: 353 DAVFHS-KPKILFCDLTIPLGETKT*APPSYRGTSVKYSYKITIATQ---KVGSHIKMVR 520
+A F S KP+++ T+P + APP+++ + K Y+ + +G I M
Sbjct: 15 EAFFRSVKPQVVAPQKTLPTKKPAIPAPPTFKTMADKTLYEFAAPSTDNVDIGLQINMGD 74
Query: 521 IPFRVLPISPIINMQDLAALCG 586
+ F + S +I M + CG
Sbjct: 75 VDFDLK--SSLITMAQASPFCG 94
>03_06_0249 + 32638112-32639140
Length = 342
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = +2
Query: 59 ILIY*HK*TIFYKMIELSAKLTTGTVYLAGEAIECCISFCYTAQPEHRNSQSHSDTLENL 238
+L+Y H F E+ + LA E +S Y PEHR +H D +
Sbjct: 79 VLVYFHGGGYFIGSFEMD-NFHACCLRLAHELPAVVLSADYRLAPEHRLPAAHDDAATAM 137
Query: 239 AWASAQ 256
+W Q
Sbjct: 138 SWVRDQ 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,412,231
Number of Sequences: 37544
Number of extensions: 320611
Number of successful extensions: 782
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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