Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11j14
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-10|CAE17898.2|  366|Caenorhabditis elegans Hypothetical p...    75   5e-14
Z78540-3|CAB01735.2|  482|Caenorhabditis elegans Hypothetical pr...    31   0.98 
Z69659-1|CAA93483.1|  329|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF106573-2|AAC78153.1|  229|Caenorhabditis elegans Regulator of ...    27   9.1  
AC024836-2|AAK39348.1|  229|Caenorhabditis elegans Regulator of ...    27   9.1  

>Z46381-10|CAE17898.2|  366|Caenorhabditis elegans Hypothetical
           protein M01F1.9 protein.
          Length = 366

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 56/161 (34%), Positives = 76/161 (47%), Gaps = 13/161 (8%)
 Frame = +2

Query: 98  MIELSAKLTTGT-VYLAGEAIECCISFCYTAQPEHRNSQSHSDTLENLAWASAQFHCFYS 274
           M+E+SA L     +YLAGE I   +    T     R  Q     +E LAW S Q  C  +
Sbjct: 1   MLEVSATLDREVAIYLAGETIRITV----TVSNLSRGKQG---VVEQLAWGSLQLICERT 53

Query: 275 TSGAQGDKTPILGK--TTSLEVAACDVGDAVFHSKPKILFCDLTIPLGETKT*A------ 430
                 + TP      TTS+  +A      V+ S P ILFC+L +  G+TK         
Sbjct: 54  IGATSSNSTPSSRPRPTTSVTKSAA----TVYSSHPNILFCELQLGPGQTKQFVCDIPLS 109

Query: 431 ----PPSYRGTSVKYSYKITIATQKVGSHIKMVRIPFRVLP 541
               PP++RG  VKYS +IT+A   V  HIK   +P R++P
Sbjct: 110 RNGIPPTFRGHLVKYSNRITVAVSHVQEHIKSAHLPIRIIP 150


>Z78540-3|CAB01735.2|  482|Caenorhabditis elegans Hypothetical
           protein C33G3.5 protein.
          Length = 482

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -3

Query: 492 FCVAIVILYEY---FTEVPLYDGGAYVFVSPSGIVKSQNNIL-GLLWNT 358
           FC+     Y+Y     +VP+YDG  +  +SPS +  +    L GLL++T
Sbjct: 17  FCLCHAEYYDYDATIRQVPIYDGSKFYEMSPSEMENAFTKTLNGLLYST 65


>Z69659-1|CAA93483.1|  329|Caenorhabditis elegans Hypothetical
           protein F07C6.1 protein.
          Length = 329

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +2

Query: 260 HCFYSTSGAQGDKTPILGKTTSLEVAACDVGDAVFHSKPKILFCDLTIPL 409
           HCF       G    + GK    E   C   D V H K K++  DL +PL
Sbjct: 262 HCFICDRNVGGGMVHVFGKAFCPECYRCRGCDKVLHYKDKVMELDL-MPL 310


>AF106573-2|AAC78153.1|  229|Caenorhabditis elegans Regulator of g
           protein signalingprotein 8.1 protein.
          Length = 229

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 301 PNIRENNFFGSSSL*CWRRSVP 366
           P I   +FF SS + CW R  P
Sbjct: 14  PQITNQDFFHSSGIECWNRQFP 35


>AC024836-2|AAK39348.1|  229|Caenorhabditis elegans Regulator of g
           protein signalingprotein 8.2 protein.
          Length = 229

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 301 PNIRENNFFGSSSL*CWRRSVP 366
           P I   +FF SS + CW R  P
Sbjct: 14  PQITNQDFFHSSGIECWNRQFP 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,008,172
Number of Sequences: 27780
Number of extensions: 312114
Number of successful extensions: 699
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)