Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11j14
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            25   0.86 
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   4.6  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   8.0  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   8.0  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   8.0  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -1

Query: 272 NRSNGTVLKPKLDFLMCHCGFASSYVQVELYNRKKYNILL 153
           N  NG +L P +   +C  G+   +   ++YN  ++  L+
Sbjct: 358 NDGNGNILSPSIHDNICSNGWICEHRWRQIYNMVRFRNLV 397


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 248 KPKL-DFLMCHCGFASSYVQVELYNRKKYNILLLHQLNI 135
           +PK+   L   C ++++Y     Y +  YNI  + Q+ I
Sbjct: 300 EPKIISSLSNSCNYSNNYYNNNNYKKLYYNINYIEQIPI 338


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 202 ELAKPQ*HIRKSSLGFSTVPLLLFNV 279
           +L + Q ++  SSLG   +PLLL ++
Sbjct: 189 QLTRRQGYVIYSSLGSFFIPLLLMSL 214


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 202 ELAKPQ*HIRKSSLGFSTVPLLLFNV 279
           +L + Q ++  SSLG   +PLLL ++
Sbjct: 189 QLTRRQGYVIYSSLGSFFIPLLLMSL 214


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 202 ELAKPQ*HIRKSSLGFSTVPLLLFNV 279
           +L + Q ++  SSLG   +PLLL ++
Sbjct: 189 QLTRRQGYVIYSSLGSFFIPLLLMSL 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,705
Number of Sequences: 438
Number of extensions: 4072
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)