Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11i23
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    52   6e-08
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    50   2e-07
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    50   4e-07
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    44   2e-05
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    42   1e-04
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    42   1e-04
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    40   4e-04
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    31   0.12 
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           30   0.27 
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    30   0.27 
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    30   0.36 
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    28   1.5  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   3.4  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.4  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    26   4.5  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    26   5.9  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    26   5.9  

>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 52.4 bits (120), Expect = 6e-08
 Identities = 24/91 (26%), Positives = 50/91 (54%)
 Frame = +2

Query: 419 GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLLVMRFASGFLFNGPF 598
           G I+  +VW  LS+  GR+  ++ G F  G+  ++ A++++  T+++ RF SGF  + P 
Sbjct: 182 GYIAGPIVWAPLSELSGRKLPLLIGMFGFGIFNISVAVAKDIQTIMMCRFFSGFFASAPL 241

Query: 599 AVLISYIAELHRTELRARVILLXKPVLRASP 691
            V+ +  A+++  + R   I +   ++   P
Sbjct: 242 TVVAAAFADMYSNKHRGTAITIFAALVFDGP 272


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 28/108 (25%), Positives = 57/108 (52%)
 Frame = +2

Query: 368 MNLSLLDMGTVTAMTYGGMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFA 547
           + +SLL M TV  + Y    S  ++W  LS+  GR+  ++ G    G+  ++ A+ ++  
Sbjct: 170 LTVSLLTM-TVFLLGY---CSGPIIWAPLSELSGRKPPILIGMLGFGIFNISVAVGKDIQ 225

Query: 548 TLLVMRFASGFLFNGPFAVLISYIAELHRTELRARVILLXKPVLRASP 691
           T+++ RF +GF  + P  V+ + +A+++  + R   I L   ++   P
Sbjct: 226 TIMMCRFFAGFFASAPLTVVAAALADMYSNKYRGTAITLFSAMVFDGP 273


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 21/91 (23%), Positives = 48/91 (52%)
 Frame = +2

Query: 419 GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLLVMRFASGFLFNGPF 598
           G  S  ++W  +S+ +GR+  ++ G F   +  +  A++++  T+++ RF SGF  + P 
Sbjct: 145 GFASGPILWAPISELVGRKIPLIVGMFMFSIFSIAVAVAKDVQTVMICRFFSGFCASSPL 204

Query: 599 AVLISYIAELHRTELRARVILLXKPVLRASP 691
           +V+ +  A++   + R   + +   +  A P
Sbjct: 205 SVVAAAFADMFDNKTRGPAVCIFACITFAGP 235


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 20/91 (21%), Positives = 41/91 (45%)
 Frame = +2

Query: 419 GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLLVMRFASGFLFNGPF 598
           G  S  +VW  + +  GRR+ M+   F   +  +  A +++  T+++ RF  GF  + P 
Sbjct: 122 GFASGPVVWAPMCELFGRRRPMIIAVFIFCIFHIAVATAKDIQTVMICRFFCGFFGSSPI 181

Query: 599 AVLISYIAELHRTELRARVILLXKPVLRASP 691
             +    +++     R  VI +   ++   P
Sbjct: 182 TTVAGSFSDMFSARTRGLVIAVYSAIIFNGP 212


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 18/54 (33%), Positives = 33/54 (61%)
 Frame = +2

Query: 419 GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLLVMRFASGF 580
           G++   +++  LS+  GRR + ++G+    L+++  A+S N A  +V RF SGF
Sbjct: 87  GVMLGPLIFSPLSELYGRRPLNIFGYTLFALMQIPTALSVNLAMFVVFRFFSGF 140


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/91 (21%), Positives = 41/91 (45%)
 Frame = +2

Query: 419 GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLLVMRFASGFLFNGPF 598
           G     + W  +S+  GR+  +  G F   + ++  A +Q+  T+++ RF  G+    P 
Sbjct: 186 GYCLGPICWAPMSEITGRKTPLYIGLFLFSVFQIAVATAQDIQTIMICRFFGGYGACVPL 245

Query: 599 AVLISYIAELHRTELRARVILLXKPVLRASP 691
            V+ +  A+++    R   I +   V+   P
Sbjct: 246 CVVAAAFADMYPNRYRGTAITIFAAVIFVGP 276


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +2

Query: 419 GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLLV 559
           G++  AMVW   +DT+GRR      F  +G+  + A  S NFA++ V
Sbjct: 130 GLLVGAMVWSLSADTIGRRWAFNLTFLFTGVFAVIAGASPNFASICV 176


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 18/69 (26%), Positives = 34/69 (49%)
 Frame = +2

Query: 452 LSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLLVMRFASGFLFNGPFAVLISYIAELH 631
           LS+ +GRR + +       ++++  A++ N A LL++RF  G     P  +    I+++ 
Sbjct: 160 LSEMIGRRIVYLVTLMIYIVLQIPCALAPNIACLLIVRFFCGCFGCTPLTLAGGVISDVW 219

Query: 632 RTELRARVI 658
            T  R   I
Sbjct: 220 ETRERGLAI 228


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
 Frame = -3

Query: 458 PTGSPTPSRTISFLR-----KSWPSQFPYPRETSS 369
           PT SP  S ++SF+        WPSQ+ +P++T S
Sbjct: 232 PTTSPINSTSLSFVDAKKPGSKWPSQYDFPKKTKS 266


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
 Frame = +2

Query: 449 FLSDTLGRRQIMVWGFFCSGLVEL-------TAAMSQNFATLLVMRFASGFLFNGPFAVL 607
           FL + LGR+ I + G F +GL+         T +    FA  ++ +F S F   GP A  
Sbjct: 401 FLVEKLGRKWIQLQGLFITGLMFAILAGSWDTISTGGRFACFVIAQFFSNF---GPNATT 457

Query: 608 ISYIAELHRTELR 646
             Y AE+    +R
Sbjct: 458 FLYPAEVFPARVR 470


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 17/76 (22%), Positives = 35/76 (46%)
 Frame = +2

Query: 431 SAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLLVMRFASGFLFNGPFAVLI 610
           S M+   LS+  GRR ++  G     +  +   +++  A + + RF +GF    P  +  
Sbjct: 98  SPMISAPLSEVFGRRMLLQVGNVIFIVFNMACGLARTKAQMYIFRFLAGFGSATPMGLGS 157

Query: 611 SYIAELHRTELRARVI 658
             I++L   + R + +
Sbjct: 158 GTISDLFTPDERGKAV 173


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 464 LGRRQIMVWGFFCSGLVELTAAMSQNFATLLVMRFASGFLFNGP 595
           +GR++I V        +++  A+  +   LL MRF +GF F  P
Sbjct: 148 VGRQKIYVLSLLVFVCLQIPTALGSSLGVLLPMRFLAGF-FGSP 190


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 452 LSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLLVMRFASGFLFNGPFA 601
           LS   GR  +         L ++    +QN  TL+++RF  GF  + P +
Sbjct: 158 LSGIYGRFVVYFCTLLMFTLFQIGGGCAQNIWTLVILRFFQGFFGSTPLS 207


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +2

Query: 419 GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLLVMRFASG 577
           G+    +  G LSD LGR+ + +          ++ A+++N+A L++     G
Sbjct: 129 GVALGPLFLGPLSDLLGRKLVYIGSLIIYVCFCISCALARNYAQLVISMLIMG 181


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 392 GTVTAMTYGGMISSAMVWGFLSDTLGRR 475
           G V A T  G I   +++GFL D  GR+
Sbjct: 86  GVVNAATNIGNIMGQLLFGFLGDFFGRK 113


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 464 LGRRQIMVWGFFCSGLVELTAAMSQNFATLLVMRFASGFLFNGP 595
           +GR++I V        +++  A+  +   LL MRF +G +F  P
Sbjct: 148 IGRQKIYVLSLIVFICLQIPTALGSSLGVLLPMRFLAG-VFGSP 190


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +2

Query: 437 MVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLLVMRFASG 577
           M  G LSD  GR+ +     F   +  ++ A+ +N   +++  F  G
Sbjct: 135 MFLGPLSDIGGRKPVYFCSIFVYTVFNISCALPRNIVQMIISHFIIG 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,982
Number of Sequences: 5004
Number of extensions: 33861
Number of successful extensions: 137
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)