Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11i19
         (228 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   0.77 
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    23   5.4  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    23   7.2  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    22   9.5  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    22   9.5  
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr...    22   9.5  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    22   9.5  
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    22   9.5  
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    22   9.5  

>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 117 CYIFSSMFEYRILSGRCYRC 58
           CY+FSS F Y+  S R Y C
Sbjct: 152 CYLFSSYFSYK--SSRQYTC 169


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 88  ILKHTRKYITDTKKKIF 138
           IL   + Y+T+TKK I+
Sbjct: 777 ILSQNKNYLTETKKDIY 793


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 109 YITDTKKKIFLEKTNKKCNQKCFFTI 186
           Y  +T + ++LEK + +  +KC F I
Sbjct: 264 YSKNTYQDLYLEKVSHEPGRKCGFRI 289


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -3

Query: 121 YLLYIFEYV*VSNIKRSVLQMHQRPVHI 38
           Y+ Y+F Y+    + R +   H  P H+
Sbjct: 652 YMTYVFHYLPFFIMGRQLFLHHYLPAHL 679


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 48  GLWCICSTDRLIFDTQTY 101
           G WC+  T  LIF T  Y
Sbjct: 114 GFWCLVCTLALIFLTYFY 131


>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 269

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 48  GLWCICSTDRLIFDTQTY 101
           G WC+  T  LIF T  Y
Sbjct: 114 GFWCLVCTLALIFLTYFY 131


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 48  GLWCICSTDRLIFDTQTY 101
           G WC+  T  LIF T  Y
Sbjct: 114 GFWCLVCTLALIFLTYFY 131


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 91  VSNIKRSVLQMHQRPVH 41
           +  +KR+VL  H+ P+H
Sbjct: 94  LKQVKRTVLLPHRSPIH 110


>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 48  GLWCICSTDRLIFDTQTY 101
           G WC+  T  LIF T  Y
Sbjct: 114 GFWCLVCTLALIFLTYFY 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 777,851
Number of Sequences: 5004
Number of extensions: 11720
Number of successful extensions: 41
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 55
effective length of database: 2,087,258
effective search space used: 41745160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)