Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11i18
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase |Schizosacchar...    27   1.7  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   3.9  
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch...    26   3.9  
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    26   5.1  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    25   6.8  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    25   6.8  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   9.0  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    25   9.0  
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po...    25   9.0  

>SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -3

Query: 306 VIFARPNVSEIIKISRPTVCSIVPCSHTSMGVGLFMRSLIKYFLGHIDILIGL 148
           V   R    + + +   T+ S V C+    G  +   S  KY  GH D++ G+
Sbjct: 162 VKITRSKAKDALLVMDNTMLSPVLCNPLDFGYDIVYESATKYLSGHHDLMGGV 214


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -2

Query: 388  DSCPNYTAVCSFFYGIFINNPVSRFTFRDFCSSKRI 281
            +S   YT +C+      I   +  F F  FC  KRI
Sbjct: 1545 ESIKTYTLLCAHDSQKRIGGSIQEFEFISFCQQKRI 1580


>SPAC14C4.08 |mug5||meiotically upregulated gene
           Mug5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +2

Query: 68  VLYIFLNLIK*LKLTQYAVYLPFALQYKPINMSICPRKYFIKDLINK 208
           +L ++   +K +  T  + YL   L++    +++C R Y I+ L+NK
Sbjct: 124 LLSLYQRQLKKISTTIESYYLADTLRHNQNILNLCERIYNIQKLLNK 170


>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 367 AVCSFFYGIFINNPVSRFTF-RDFCSSK 287
           ++C  F+  F+ NP  R+TF + FC  +
Sbjct: 83  SLCDVFHLSFLYNPFCRYTFYKHFCGGE 110


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/67 (25%), Positives = 30/67 (44%)
 Frame = +2

Query: 188 IKDLINKPTPIDVWLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSIKKGTYC 367
           + D ++  TP++ W   TIE+ V R + I   T           AD  I K + K+    
Sbjct: 191 VLDSLHLDTPLEKWDDDTIEKVVNRFVDIKFPTVIALNKIDHPDADANISKIARKEDPNR 250

Query: 368 CIIGTAV 388
            ++ +A+
Sbjct: 251 LVLASAI 257


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 410 VQAYKFIDLSSQPEMKSSWEIEVNEANLFLEGKLIPN 520
           V+  K + +S+  E+KS   I  N + LFL G+ I N
Sbjct: 455 VRLRKCLKVSNTTELKSMKLINNNPSRLFLHGERIHN 491


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 624 RSNTTVFYQIVLFFLLRSIINHQWSYC 544
           R+   VFY  V   LL +I NH W+ C
Sbjct: 394 RATKDVFYLHVGELLLSNIENHLWTPC 420


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 124 NSVLSKF*LFY*VKKNVQYFSRS*RDYL*ISFSFTFYNL 8
           N+++SK+ +    + N+ +F R  R  L  S+S  FY L
Sbjct: 373 NTIISKYFIREITESNIVHFKRLVRVVLEASYSDKFYRL 411


>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/46 (26%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = -1

Query: 128 DKQRIE*VLTILLS*EKCTILFTIMKG----LFINFIFLHLLQFTN 3
           D Q  + ++++ LS E+C +LF++++     L++N +   L++  N
Sbjct: 219 DTQSCKLIVSLPLSQEECEVLFSLLRSKKEPLYLNTLLALLVESNN 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,513
Number of Sequences: 5004
Number of extensions: 54308
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)