Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11i18
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0715 + 27083102-27083308,27083384-27083504,27084014-270840...    40   0.001
03_03_0266 - 16014740-16015045,16015566-16015601,16015623-160156...    30   1.3  
08_01_0203 + 1639993-1641141                                           29   3.0  
02_01_0586 - 4334896-4335177,4336340-4338007                           28   5.3  
10_08_0377 + 17343244-17343372,17344316-17344393,17344496-173445...    28   7.0  
01_01_0717 - 5559414-5559435,5559589-5559764,5559876-5559917,556...    28   7.0  
06_03_0400 - 20420257-20421837                                         27   9.2  

>03_05_0715 +
           27083102-27083308,27083384-27083504,27084014-27084087,
           27085713-27085838
          Length = 175

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
 Frame = +2

Query: 224 VWLQGTIEQTVGRD---ILIISDTFGRAKITKC-ETADGVIDKNSIKKGTYCCIIGTAVK 391
           VWLQG +     RD    +++ D    A+IT   + A+G       ++G Y  ++G+   
Sbjct: 66  VWLQGVVVLADYRDGAGHILVDDGSCVAEITLTPKEAEG----QPWREGMYVMVLGSYSG 121

Query: 392 TKGVPE-----VQAYKFIDLSSQPEMKSSWEIEVNEA-NLF 496
            + +P      ++ +K +DLS+QP+ +S W +EV EA N F
Sbjct: 122 KESLPRANRPVIKVHKLVDLSAQPDRESMWYMEVVEAFNFF 162


>03_03_0266 - 16014740-16015045,16015566-16015601,16015623-16015643,
            16016331-16016591,16017504-16018985,16019834-16019989,
            16020154-16020277,16020399-16020615,16020877-16021774,
            16022947-16023291,16023371-16023565,16023751-16024453,
            16024866-16025467
          Length = 1781

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 128  LPFALQYKPINMSICPRKYFIKDLINKPTPIDVWLQGTIEQTVGRDIL 271
            +PF   Y+ +N   C    F  D +N+ TP+ V    T+E+ VG   L
Sbjct: 1315 MPFLQLYRALNKQWCRSNRF--DALNEYTPVHVSFLRTVERQVGPKFL 1360


>08_01_0203 + 1639993-1641141
          Length = 382

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +2

Query: 335 DKNSIKKGTYCCI--IGTAVKTKGVPEVQAYKFIDLSSQPEMKSSWEIEVNEANLFLEGK 508
           D++  +K    CI  + T+ K +GV E Q Y+ + LS    M   WEI   +   +    
Sbjct: 315 DQHHCQKLKEACIEFLATSKKMEGVMESQGYEKMKLSCPSFMVDLWEIIGRKMTSY---S 371

Query: 509 LIPNI 523
           +IPNI
Sbjct: 372 VIPNI 376


>02_01_0586 - 4334896-4335177,4336340-4338007
          Length = 649

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 272 IISDTFGRAKITKCETADGVIDKNSIKKGTYCCIIGTAVKTKGVPEVQAYKF 427
           IISD    A   +    D   D ++   G +C ++G+ ++ +  PE+Q   F
Sbjct: 111 IISDRLAAASFVRAGDDD---DDDAPSSGPWCLVVGSKIRARVGPELQLKTF 159


>10_08_0377 +
           17343244-17343372,17344316-17344393,17344496-17344558,
           17344836-17344883,17345203-17345349,17346264-17346395,
           17346905-17346945,17347605-17347633,17348969-17349096,
           17349919-17349994,17350111-17350231,17350300-17350399,
           17350491-17350572,17350664-17350746,17351978-17352088,
           17352260-17352311,17352363-17352408,17352652-17352860,
           17353128-17353251,17353667-17353741,17353837-17353891,
           17354476-17354595,17354670-17354762,17354869-17355014,
           17355152-17355329,17356876-17357110,17357824-17357912
          Length = 929

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 369 QQYVPFFMEFLSITPSAVSHFVIFARP 289
           Q ++P F+E L++ P   S   I ARP
Sbjct: 140 QDFIPSFLELLTVLPQECSSHKIAARP 166


>01_01_0717 -
           5559414-5559435,5559589-5559764,5559876-5559917,
           5560039-5560080,5560268-5560370,5560466-5560527,
           5561638-5561719,5567067-5567353,5568085-5568184,
           5568584-5568651,5569819-5569860,5570001-5570032,
           5572616-5572652
          Length = 364

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 395 KGVPEVQAYKFIDLSSQPEMKSSWEIEVNEANLFLEGKLIPN 520
           KG+ +++A K   L ++ E     E+E+   N++L  K++ N
Sbjct: 262 KGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVVEN 303


>06_03_0400 - 20420257-20421837
          Length = 526

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 63  HDHEGIIYKFHFPSPFTI 10
           HD+EG+ Y+   P PF I
Sbjct: 112 HDYEGLSYRSEIPEPFAI 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,568,516
Number of Sequences: 37544
Number of extensions: 280085
Number of successful extensions: 638
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)