Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11i18
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98860-1|CAB11544.1|  677|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U78081-1|AAB84362.1|  246|Caenorhabditis elegans RNA polymerase ...    27   8.3  
AC024832-4|AAF59612.1|  250|Caenorhabditis elegans Mediator prot...    27   8.3  

>Z98860-1|CAB11544.1|  677|Caenorhabditis elegans Hypothetical
           protein Y26G10.1 protein.
          Length = 677

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 288 NVSEIIKISRPTVCSIVPCSHTSMGVGLFMRSLIKYFLGHIDILIGLYCRAN 133
           ++SEI K++   VCS+ P +  S+        L+ Y   + D+  G +C  N
Sbjct: 368 SISEIWKLTGVCVCSLAPDTSLSLNFLPKSTQLVNY---NYDLRFGAFCDTN 416


>U78081-1|AAB84362.1|  246|Caenorhabditis elegans RNA polymerase
           transcriptionalregulation mediator protein.
          Length = 246

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 624 RSNTTVFYQIVLFFLLRSIINHQWSYCYNL*QSSMLGINFPSKNRLASFTSIS 466
           R+N T    I  ++++   + HQ    Y+L QS +LG   P +N     T+ S
Sbjct: 92  RNNVTNVSPIAYYYVINGSV-HQAPDMYSLVQSRLLGALEPLRNAFGEVTNYS 143


>AC024832-4|AAF59612.1|  250|Caenorhabditis elegans Mediator protein
           6 protein.
          Length = 250

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 624 RSNTTVFYQIVLFFLLRSIINHQWSYCYNL*QSSMLGINFPSKNRLASFTSIS 466
           R+N T    I  ++++   + HQ    Y+L QS +LG   P +N     T+ S
Sbjct: 96  RNNVTNVSPIAYYYVINGSV-HQAPDMYSLVQSRLLGALEPLRNAFGEVTNYS 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,872,776
Number of Sequences: 27780
Number of extensions: 292410
Number of successful extensions: 716
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)