Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11i17
         (122 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81481-6|CAB63435.1|  344|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U55364-3|AAN84821.1|  349|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>Z81481-6|CAB63435.1|  344|Caenorhabditis elegans Hypothetical
           protein C38D9.8 protein.
          Length = 344

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 111 NLYITILLKN*NTKYQTKQVSVR*HRSRNYISMLKK 4
           N+ +T LL+  N      +VS+  H  RN++ +LKK
Sbjct: 183 NMALTDLLRFNNRIVFLDRVSISNHTIRNFLQVLKK 218


>U55364-3|AAN84821.1|  349|Caenorhabditis elegans Hypothetical
           protein F21C10.12 protein.
          Length = 349

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 41  HLTETCLVWYFVF*FFNKIVMYKFKKK 121
           H+  T  ++YF    F  I+ Y FKK+
Sbjct: 286 HIGTTFFIYYFFSARFRNILCYLFKKR 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,180
Number of Sequences: 27780
Number of extensions: 29571
Number of successful extensions: 50
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 12,740,198
effective HSP length: 21
effective length of database: 12,156,818
effective search space used: 230979542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)