Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11i14
(670 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 291 4e-79
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 291 4e-79
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 283 1e-76
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 181 5e-46
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 177 8e-45
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 176 1e-44
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 112 2e-25
U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 58 6e-09
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 39 0.003
U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chai... 34 0.079
Z36949-2|CAA85416.1| 184|Caenorhabditis elegans Hypothetical pr... 33 0.24
AF077533-2|AAP40529.1| 972|Caenorhabditis elegans Hypothetical ... 31 0.98
AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical ... 31 0.98
AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe... 31 0.98
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 30 1.7
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 30 1.7
U53154-6|AAC25855.3| 357|Caenorhabditis elegans Nuclear hormone... 29 3.9
U28971-7|ABC48263.1| 309|Caenorhabditis elegans Hypothetical pr... 29 3.9
AY204192-1|AAO39196.1| 357|Caenorhabditis elegans nuclear recep... 29 3.9
AY204191-1|AAO39195.1| 357|Caenorhabditis elegans nuclear recep... 29 3.9
AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical ... 28 6.9
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr... 27 9.1
U23139-10|AAN65328.1| 558|Caenorhabditis elegans Biotin protein... 27 9.1
U23139-9|AAN65327.1| 632|Caenorhabditis elegans Biotin protein ... 27 9.1
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ... 27 9.1
AY601658-1|AAS98223.1| 558|Caenorhabditis elegans biotin protei... 27 9.1
AY601657-1|AAS98222.1| 558|Caenorhabditis elegans biotin protei... 27 9.1
AY601656-1|AAS98221.1| 632|Caenorhabditis elegans biotin protei... 27 9.1
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 291 bits (713), Expect = 4e-79
Identities = 133/195 (68%), Positives = 165/195 (84%)
Frame = +1
Query: 85 MSSSAIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYI 264
M++SA++ILD+KGK +ISRNYRGD+D+ IDKF+ LLMEKEEEG P+L + F +I
Sbjct: 1 MATSAMFILDLKGKTIISRNYRGDIDMTAIDKFIHLLMEKEEEGSAAPVLTYQDTNFVFI 60
Query: 265 KTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDF 444
K N+Y+VS + N N+ ++ FLYK VEV +EYFK++EEES+RDNFVVIYELLDE++DF
Sbjct: 61 KHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDF 120
Query: 445 GYPQTTDSKILQEYITQEGHKLEMQPKIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNL 624
G+PQTT+S+ILQEYITQEG KL P+ PMAVTNAVSWRSEGIKYRKNEVFLDVIESVN+
Sbjct: 121 GFPQTTESRILQEYITQEGQKLISAPRPPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNM 180
Query: 625 LANSNGNVLRSEIVG 669
LA++NG VL+SEIVG
Sbjct: 181 LASANGTVLQSEIVG 195
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 291 bits (713), Expect = 4e-79
Identities = 133/195 (68%), Positives = 165/195 (84%)
Frame = +1
Query: 85 MSSSAIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYI 264
M++SA++ILD+KGK +ISRNYRGD+D+ IDKF+ LLMEKEEEG P+L + F +I
Sbjct: 1 MATSAMFILDLKGKTIISRNYRGDIDMTAIDKFIHLLMEKEEEGSAAPVLTYQDTNFVFI 60
Query: 265 KTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDF 444
K N+Y+VS + N N+ ++ FLYK VEV +EYFK++EEES+RDNFVVIYELLDE++DF
Sbjct: 61 KHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDF 120
Query: 445 GYPQTTDSKILQEYITQEGHKLEMQPKIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNL 624
G+PQTT+S+ILQEYITQEG KL P+ PMAVTNAVSWRSEGIKYRKNEVFLDVIESVN+
Sbjct: 121 GFPQTTESRILQEYITQEGQKLISAPRPPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNM 180
Query: 625 LANSNGNVLRSEIVG 669
LA++NG VL+SEIVG
Sbjct: 181 LASANGTVLQSEIVG 195
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 283 bits (693), Expect = 1e-76
Identities = 134/195 (68%), Positives = 164/195 (84%)
Frame = +1
Query: 85 MSSSAIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYI 264
MS S ++ILD+KG V+ISRNYRGDVD+ I+KFMPLL+EKE+EG +P+L ++ YI
Sbjct: 1 MSISGLFILDLKGNVVISRNYRGDVDMSCIEKFMPLLVEKEDEGSASPVLVHQGISYTYI 60
Query: 265 KTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDF 444
K N+Y+V+ +KKN N+ LV LYKIVEV EYFK LEEE++RDNFV+IYEL DE++DF
Sbjct: 61 KYMNVYLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEMLDF 120
Query: 445 GYPQTTDSKILQEYITQEGHKLEMQPKIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNL 624
GYPQTT+SKILQE+ITQ+G++LE + PMAVTNAVSWRSEGIKYRKNEVFLDVIESVN+
Sbjct: 121 GYPQTTESKILQEFITQQGNRLE-TVRPPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNM 179
Query: 625 LANSNGNVLRSEIVG 669
LAN+ G VLRSEIVG
Sbjct: 180 LANAQGTVLRSEIVG 194
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 181 bits (440), Expect = 5e-46
Identities = 85/193 (44%), Positives = 129/193 (66%), Gaps = 3/193 (1%)
Frame = +1
Query: 100 IYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYIKTNNL 279
+++ + KG+VLISR YR DV +D F ++ ++ + +P+ + +F ++K N+
Sbjct: 5 LFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQ-VRSPVTNMARTSFFHVKRGNV 63
Query: 280 YIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGYPQT 459
+I + T++N N A+VF FL + + M YF +L EE++++NFV+IYELLDE++DFGYPQ
Sbjct: 64 WICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQN 123
Query: 460 TDSKILQEYITQEGHKL---EMQPKIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNLLA 630
TD +L+ +ITQ+G + E Q +I VT + WR EGIKYR+NE+FLDVIE VNLL
Sbjct: 124 TDPGVLKTFITQQGVRTATKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVIEYVNLLM 183
Query: 631 NSNGNVLRSEIVG 669
N G VL + + G
Sbjct: 184 NQQGQVLSAHVAG 196
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 177 bits (430), Expect = 8e-45
Identities = 85/199 (42%), Positives = 129/199 (64%), Gaps = 9/199 (4%)
Frame = +1
Query: 100 IYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYIKTNNL 279
+++ + KG+VLISR YR DV +D F ++ ++ + +P+ + +F ++K N+
Sbjct: 5 LFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQ-VRSPVTNMARTSFFHVKRGNV 63
Query: 280 YIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGYPQT 459
+I + T++N N A+VF FL + + M YF +L EE++++NFV+IYELLDE++DFGYPQ
Sbjct: 64 WICAVTRQNVNAAMVFAFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQN 123
Query: 460 TDSKILQEYITQEGHKL---------EMQPKIPMAVTNAVSWRSEGIKYRKNEVFLDVIE 612
TD +L+ +ITQ+G + E Q +I VT + WR EGIKYR+NE+FLDVIE
Sbjct: 124 TDPGVLKTFITQQGVRTADAPVPVTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVIE 183
Query: 613 SVNLLANSNGNVLRSEIVG 669
VNLL N G VL + + G
Sbjct: 184 YVNLLMNQQGQVLSAHVAG 202
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 176 bits (428), Expect = 1e-44
Identities = 85/199 (42%), Positives = 129/199 (64%), Gaps = 9/199 (4%)
Frame = +1
Query: 100 IYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYIKTNNL 279
+++ + KG+VLISR YR DV +D F ++ ++ + +P+ + +F ++K N+
Sbjct: 5 LFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQ-VRSPVTNMARTSFFHVKRGNV 63
Query: 280 YIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGYPQT 459
+I + T++N N A+VF FL + + M YF +L EE++++NFV+IYELLDE++DFGYPQ
Sbjct: 64 WICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQN 123
Query: 460 TDSKILQEYITQEGHKL---------EMQPKIPMAVTNAVSWRSEGIKYRKNEVFLDVIE 612
TD +L+ +ITQ+G + E Q +I VT + WR EGIKYR+NE+FLDVIE
Sbjct: 124 TDPGVLKTFITQQGVRTADAPVPVTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVIE 183
Query: 613 SVNLLANSNGNVLRSEIVG 669
VNLL N G VL + + G
Sbjct: 184 YVNLLMNQQGQVLSAHVAG 202
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 112 bits (270), Expect = 2e-25
Identities = 51/202 (25%), Positives = 108/202 (53%), Gaps = 10/202 (4%)
Frame = +1
Query: 94 SAIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYIKTN 273
++++ ++ G VL+ ++++ + + D F + + + P++ T + N
Sbjct: 3 NSLFFVNSSGDVLLEKHWKSVIHRSICDYFFDIQKKSIHPEDVPPIISTPHHYLINVYQN 62
Query: 274 NLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGYP 453
NL++V+ +V FL+++++ T+YF E + S+++N V+++ELLDE++D G+P
Sbjct: 63 NLFLVAVITVETPPLMVIEFLHRVIQTFTQYFDEFSDSSMKENCVMVFELLDEMLDNGFP 122
Query: 454 QTTDSKILQEYI----------TQEGHKLEMQPKIPMAVTNAVSWRSEGIKYRKNEVFLD 603
T+ ILQ+ I Q + + +P + + WR +G+KY NE + D
Sbjct: 123 LVTEMNILQDLIKPPNFLRNIANQVTGRTNLSETLPTGQLSNIPWRRQGVKYTNNEAYFD 182
Query: 604 VIESVNLLANSNGNVLRSEIVG 669
VIE ++++ + G+ + +EI G
Sbjct: 183 VIEEIDVIVDKQGSTVFAEIQG 204
>U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical
protein C13B9.3 protein.
Length = 515
Score = 58.0 bits (134), Expect = 6e-09
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Frame = +1
Query: 97 AIYILDVKGKVLISRNYRGDVDL----GVIDKFMPLL-MEKEEEGMLTPLLQTSECTFAY 261
A IL GK+L++R + D+ G++D F L+ EKE ++T + Y
Sbjct: 5 AACILSKTGKLLVARQFVNDMMRSRLEGLVDAFPKLIGNEKEAATRQHTFVETDSVRYVY 64
Query: 262 IKTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELID 441
+N+Y+V T KN+NI L V V+ EY + EE+ I + + DE++
Sbjct: 65 HPLDNIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEILAHDFDLIFAFDEVVT 124
Query: 442 FGYPQTTDSKILQEYITQEGHK 507
GY ++ + ++ + + H+
Sbjct: 125 LGYRESVNLAQIRTFTEMDSHE 146
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Frame = +1
Query: 232 LQTSECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVV 411
L+ + Y + +LY ++N N + +++ VE++ +YF + E I NF
Sbjct: 50 LEYKDLKVVYKRYASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIFNFEK 109
Query: 412 IYELLDELIDFGYPQTTDSK-ILQEYITQEGHKLEMQPK 525
Y +LDE + G Q T K +L+ Q+ + E P+
Sbjct: 110 AYFILDEFLLAGEIQETSKKQVLKAIAAQDLIQEEETPQ 148
>U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chain
(clathrin associatedcomplex) protein 2 protein.
Length = 142
Score = 34.3 bits (75), Expect = 0.079
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 334 LYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFG-YPQTTDSKILQEYI 489
++ VEV+ EYF + E + NF +Y ++DE+ G +T+ +K+L++ +
Sbjct: 84 IHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLL 136
>Z36949-2|CAA85416.1| 184|Caenorhabditis elegans Hypothetical
protein F59E10.3 protein.
Length = 184
Score = 32.7 bits (71), Expect = 0.24
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 6/134 (4%)
Frame = +1
Query: 88 SSSAIYILDVKGKVLISRNYRGDVDLGVIDK---FMPLLMEKEEEGMLTPLLQTSECTFA 258
S I ILD G ++++ Y G + + F L K +L T
Sbjct: 13 SIKGIVILDQDGNRVLAKYY-DRTTFGTVKEQKAFEKSLFSKTSRNTSADILLLDGVTCL 71
Query: 259 YIKTNNLY--IVSTTKKNAN-IALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLD 429
Y +LY ++ +T++N + LY V V+ K +E++++ D+ I ++D
Sbjct: 72 YRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLR--KNVEKKALIDSMDTIMLIID 129
Query: 430 ELIDFGYPQTTDSK 471
E+ D G TD++
Sbjct: 130 EICDEGIIMETDAQ 143
>AF077533-2|AAP40529.1| 972|Caenorhabditis elegans Hypothetical
protein F54G2.1b protein.
Length = 972
Score = 30.7 bits (66), Expect = 0.98
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +1
Query: 169 VIDKFMPLLMEKEEEGMLT 225
+IDK+ PL ++KEEE MLT
Sbjct: 429 IIDKWQPLTLDKEEEDMLT 447
>AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical
protein F54G2.1a protein.
Length = 1126
Score = 30.7 bits (66), Expect = 0.98
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +1
Query: 169 VIDKFMPLLMEKEEEGMLT 225
+IDK+ PL ++KEEE MLT
Sbjct: 413 IIDKWQPLTLDKEEEDMLT 431
>AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform a protein.
Length = 691
Score = 30.7 bits (66), Expect = 0.98
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +1
Query: 265 KTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDE 432
K NLY +KN +I +++V K E+ E+F + +E D + E +E
Sbjct: 44 KKKNLYSDLACRKNVDIFIIYVSFEKKKEIFLEFFHHVLQEE-HDEYSAFKEAYEE 98
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
T06E4.3b protein.
Length = 2514
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +1
Query: 181 FMPLLMEKEEEGMLTP-----LLQTSECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKI 345
FM LL+ E L P +++ T+ IK +++ST + N + F+F+++
Sbjct: 981 FMHLLLVSARE-FLNPRNPSMIVEQLRATYENIKKGEKFMISTAIETRNEGIEFLFIFRT 1039
Query: 346 VEVMTEYFKELEEESIRDNFVVIYE 420
+YF L E+ ++F ++ +
Sbjct: 1040 YFTNDQYF--LTREATAESFRILLQ 1062
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
T06E4.3a protein.
Length = 2531
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +1
Query: 181 FMPLLMEKEEEGMLTP-----LLQTSECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKI 345
FM LL+ E L P +++ T+ IK +++ST + N + F+F+++
Sbjct: 981 FMHLLLVSARE-FLNPRNPSMIVEQLRATYENIKKGEKFMISTAIETRNEGIEFLFIFRT 1039
Query: 346 VEVMTEYFKELEEESIRDNFVVIYE 420
+YF L E+ ++F ++ +
Sbjct: 1040 YFTNDQYF--LTREATAESFRILLQ 1062
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +1
Query: 181 FMPLLMEKEEEGMLTP-----LLQTSECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKI 345
FM LL+ E L P +++ T+ IK +++ST + N + F+F+++
Sbjct: 981 FMHLLLVSARE-FLNPRNPSMIVEQLRATYENIKKGEKFMISTAIETRNEGIEFLFIFRT 1039
Query: 346 VEVMTEYFKELEEESIRDNFVVIYE 420
+YF L E+ ++F ++ +
Sbjct: 1040 YFTNDQYF--LTREATAESFRILLQ 1062
>U53154-6|AAC25855.3| 357|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 107 protein.
Length = 357
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 375 FFEVLSHNFNNFVQEYKHKCNISIFLCG*YNVQV 274
FFE L + N +++ + KC I LCG YN +V
Sbjct: 313 FFETL--DTLNIIEKAERKCQEEIALCGFYNFEV 344
>U28971-7|ABC48263.1| 309|Caenorhabditis elegans Hypothetical
protein B0244.4 protein.
Length = 309
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = -3
Query: 662 ISLLSTLPFELANKFTDSITSKKTSFFLYFMPSDLHDTALV---TAMGILGCISSL*PSW 492
IS L+ LA + ITS T +FL+F+ DL +L+ IL ++++ P
Sbjct: 90 ISALTACVIMLALRILQLITSSFTIYFLFFLIDDLSFYSLLGSYVGSAILLYLATIRP-- 147
Query: 491 VMYSCRILLSVV 456
++YS RI + V
Sbjct: 148 ILYSNRISVRTV 159
>AY204192-1|AAO39196.1| 357|Caenorhabditis elegans nuclear receptor
NHR-107 protein.
Length = 357
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 375 FFEVLSHNFNNFVQEYKHKCNISIFLCG*YNVQV 274
FFE L + N +++ + KC I LCG YN +V
Sbjct: 313 FFETL--DTLNIIEKAERKCQEEIALCGFYNFEV 344
>AY204191-1|AAO39195.1| 357|Caenorhabditis elegans nuclear receptor
NHR-107 protein.
Length = 357
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 375 FFEVLSHNFNNFVQEYKHKCNISIFLCG*YNVQV 274
FFE L + N +++ + KC I LCG YN +V
Sbjct: 313 FFETL--DTLNIIEKAERKCQEEIALCGFYNFEV 344
>AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical
protein F13C5.1 protein.
Length = 437
Score = 27.9 bits (59), Expect = 6.9
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = -3
Query: 398 SRMLSSSNSLKYSVITSTI--LYKNTNTSAILAF--FFVVDTMYKLLVLI*ANVHSLVCN 231
SR LSS SL +S T + ++++T+T IL F F + L +L+ ++SL
Sbjct: 28 SRRLSSLASLPFSKTTPSFFQIHRHTHTHTILVFVVHFFISIHLVLSLLLKIVIYSLFSG 87
Query: 230 KGVNIPSSSFS 198
+ S FS
Sbjct: 88 APQTLQSCEFS 98
>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
F21C10.7 protein.
Length = 2541
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +1
Query: 370 KELEEESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGHKLEMQPKIPMAVTNA 549
KEL E + N +V+ + +E PQ L++ + EG + E +I
Sbjct: 1099 KELHERAASQN-IVVRKQEEERSRVQAPQIITQ--LKDDVVDEGCRYEFSARINGEPEPT 1155
Query: 550 VSWRSEGIKYRKN 588
+SW +GI + N
Sbjct: 1156 ISWLKDGIDVKSN 1168
>U23139-10|AAN65328.1| 558|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform c protein.
Length = 558
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 644 LPFELANKFTDSITSKKTSFFLYF 573
LP E+ N+ +D+ TSK F LYF
Sbjct: 273 LPIEVVNRDSDAGTSKNFDFNLYF 296
>U23139-9|AAN65327.1| 632|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform b protein.
Length = 632
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 644 LPFELANKFTDSITSKKTSFFLYF 573
LP E+ N+ +D+ TSK F LYF
Sbjct: 347 LPIEVVNRDSDAGTSKNFDFNLYF 370
>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform a protein.
Length = 1051
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 644 LPFELANKFTDSITSKKTSFFLYF 573
LP E+ N+ +D+ TSK F LYF
Sbjct: 766 LPIEVVNRDSDAGTSKNFDFNLYF 789
>AY601658-1|AAS98223.1| 558|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (62.5 kD) alternative
variant d protein.
Length = 558
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 644 LPFELANKFTDSITSKKTSFFLYF 573
LP E+ N+ +D+ TSK F LYF
Sbjct: 273 LPIEVVNRDSDAGTSKNFDFNLYF 296
>AY601657-1|AAS98222.1| 558|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (62.5 kD) alternative
variant c protein.
Length = 558
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 644 LPFELANKFTDSITSKKTSFFLYF 573
LP E+ N+ +D+ TSK F LYF
Sbjct: 273 LPIEVVNRDSDAGTSKNFDFNLYF 296
>AY601656-1|AAS98221.1| 632|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (70.9 kD) alternative
variant b protein.
Length = 632
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 644 LPFELANKFTDSITSKKTSFFLYF 573
LP E+ N+ +D+ TSK F LYF
Sbjct: 347 LPIEVVNRDSDAGTSKNFDFNLYF 370
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,239,129
Number of Sequences: 27780
Number of extensions: 328173
Number of successful extensions: 879
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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