Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11i10
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    28   0.48 
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    27   1.5  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   1.9  
SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr ...    26   1.9  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    24   7.8  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    24   7.8  

>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 28.3 bits (60), Expect = 0.48
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 233 KGVCSCDQTKTCGCEQEVVFVLGVIHCFFICYPL 132
           +G+      K  G E  ++   GV HCF++ YP+
Sbjct: 279 EGIAYEKALKAAGNETRLIVYEGVPHCFWVYYPM 312


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 279 FLLSYLKFCKFLVEYISQLCHGLL 350
           FLLS+L  C+ L+E+++  C  L+
Sbjct: 75  FLLSHLSLCQNLIEFLTARCPRLV 98


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 259 EVEGALSFCCLTSNSANFLLNISVNCAMD 345
           E+E AL  CC  S   + L    V C++D
Sbjct: 116 EIERALLSCCKRSKDPSILFPTDVPCSLD 144


>SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 190 SQPHVLVWSQLQTPLCPCRVESVEVEGALSFC 285
           SQ HV+V   +   +    +ES E+EG L  C
Sbjct: 67  SQGHVVVGMDISPSMLSVALESQEIEGDLLLC 98


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 256 VEVEGALSFCCLTSNSANFLLNISVNCAMDC*IPSIV 366
           VE+  ++ FCCL   S++ ++N   N  +   I SI+
Sbjct: 305 VELRHSIFFCCLRCLSSSRIVNSETNVMVPYMIYSIL 341


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 395 YFLFIKLHNLTMEGIQQSMAQLTDIFNKKF 306
           YFL +   N  +  + ++M  + D FNK+F
Sbjct: 2   YFLILFSSNAELGEVLRTMRSVEDRFNKRF 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,614,961
Number of Sequences: 5004
Number of extensions: 30884
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)