Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11i10
(404 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 27 3.9
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 27 3.9
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 27 3.9
DQ010405-1|AAY32916.1| 210|Caenorhabditis elegans methyl-bindin... 27 6.8
AF003137-10|AAT48622.1| 210|Caenorhabditis elegans Hypothetical... 27 6.8
Z93397-7|CAB07722.2| 483|Caenorhabditis elegans Hypothetical pr... 26 9.0
Z93372-6|CAB07549.2| 483|Caenorhabditis elegans Hypothetical pr... 26 9.0
U53333-3|AAA96156.1| 108|Caenorhabditis elegans Hypothetical pr... 26 9.0
AL021489-2|CAA16370.1| 333|Caenorhabditis elegans Hypothetical ... 26 9.0
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 27.5 bits (58), Expect = 3.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 285 LSYLKFCKFLVEYISQLCHG 344
+S + CK+L+E + +LCHG
Sbjct: 1167 MSKVPMCKYLMEKVFKLCHG 1186
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 27.5 bits (58), Expect = 3.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 285 LSYLKFCKFLVEYISQLCHG 344
+S + CK+L+E + +LCHG
Sbjct: 1173 MSKVPMCKYLMEKVFKLCHG 1192
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 27.5 bits (58), Expect = 3.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 285 LSYLKFCKFLVEYISQLCHG 344
+S + CK+L+E + +LCHG
Sbjct: 1173 MSKVPMCKYLMEKVFKLCHG 1192
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 27.5 bits (58), Expect = 3.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 285 LSYLKFCKFLVEYISQLCHG 344
+S + CK+L+E + +LCHG
Sbjct: 1173 MSKVPMCKYLMEKVFKLCHG 1192
>DQ010405-1|AAY32916.1| 210|Caenorhabditis elegans methyl-binding
protein-2 protein.
Length = 210
Score = 26.6 bits (56), Expect = 6.8
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = -3
Query: 288 TAETERSLHFNTLHTARTQRSLQLRPDQNVWLRTRSSVR 172
TA+ E + + L R++R ++RP Q +W ++ S ++
Sbjct: 54 TAQPETKVQNDELLKRRSRRKTEMRPFQAMWAKSLSGLQ 92
>AF003137-10|AAT48622.1| 210|Caenorhabditis elegans Hypothetical
protein C27A12.10 protein.
Length = 210
Score = 26.6 bits (56), Expect = 6.8
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = -3
Query: 288 TAETERSLHFNTLHTARTQRSLQLRPDQNVWLRTRSSVR 172
TA+ E + + L R++R ++RP Q +W ++ S ++
Sbjct: 54 TAQPETKVQNDELLKRRSRRKTEMRPFQAMWAKSLSGLQ 92
>Z93397-7|CAB07722.2| 483|Caenorhabditis elegans Hypothetical
protein ZC482.5 protein.
Length = 483
Score = 26.2 bits (55), Expect = 9.0
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = -3
Query: 252 LHTARTQRSL-QLRPDQNVWLRTRSSVRSRCHSLLLYLLPTAIVCPLL--SLSKFSNN 88
LHT L ++R D V + R ++RSRC L CP+ SL FS +
Sbjct: 142 LHTLTVPNILFRVRSDGQVHVSQRLTIRSRCQMFLKKFPMDTQACPIEVGSLGYFSKD 199
>Z93372-6|CAB07549.2| 483|Caenorhabditis elegans Hypothetical
protein ZC482.5 protein.
Length = 483
Score = 26.2 bits (55), Expect = 9.0
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = -3
Query: 252 LHTARTQRSL-QLRPDQNVWLRTRSSVRSRCHSLLLYLLPTAIVCPLL--SLSKFSNN 88
LHT L ++R D V + R ++RSRC L CP+ SL FS +
Sbjct: 142 LHTLTVPNILFRVRSDGQVHVSQRLTIRSRCQMFLKKFPMDTQACPIEVGSLGYFSKD 199
>U53333-3|AAA96156.1| 108|Caenorhabditis elegans Hypothetical
protein F36A4.11 protein.
Length = 108
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 403 FFFIFYLLNFTISQWKVFS 347
+FF ++L NFT S WK+ S
Sbjct: 33 WFFFYFLKNFTNSVWKLGS 51
>AL021489-2|CAA16370.1| 333|Caenorhabditis elegans Hypothetical
protein Y44A6C.2 protein.
Length = 333
Score = 26.2 bits (55), Expect = 9.0
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 144 NKEAVNDTE-NEHYFLFAATRFGLVAAADSF 233
N E N TE N+HYFL A R AD F
Sbjct: 235 NAELWNQTERNQHYFLNAEHRKNFKKIADHF 265
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,995,819
Number of Sequences: 27780
Number of extensions: 179928
Number of successful extensions: 538
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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