Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11i06
(574 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 28 0.84
SPBC577.15c |||NASP family histone binding protein|Schizosacchar... 28 1.1
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 27 1.5
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 27 2.6
SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces pom... 26 4.5
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 25 6.0
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 25 7.9
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 25 7.9
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 25 7.9
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 28.3 bits (60), Expect = 0.84
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 360 FGGVTSCRKVSYTSSESFEKNRNGWSDTPSVTVELRGKNTRFNLSDNFIRLLCQNTKS 533
+G + + + + S FE WS TPS T + KN F + N L+ +T S
Sbjct: 562 YGNMVNDSSIESSDSFVFENTSLSWSPTPS-TALFQLKNLNFTIPRNQFTLVVGSTGS 618
>SPBC577.15c |||NASP family histone binding
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 27.9 bits (59), Expect = 1.1
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Frame = +3
Query: 159 HRKQNSLKDKHVKGKESASAACET---QVCRESLEEC------LKN----FDKNVLAEMR 299
+ ++N + DK KGK+ A + T + RE L E LK+ ++ V+++M
Sbjct: 282 NERENEVTDKKGKGKQKAEESTLTSDLENLREMLSELEQKTLDLKHGAPSLEEAVMSKMH 341
Query: 300 -----SVDLRSLATIAASSRRSLNDFGGVTSCRKVSYTSSESFEK 419
S D SLA A + ++ ND GG+ ++ + S +K
Sbjct: 342 ESSLLSKDSSSLAQAVAEAVKNANDLGGLVKRKRTKQEVTSSSQK 386
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/38 (28%), Positives = 25/38 (65%)
Frame = +1
Query: 355 TILAVLHLVEKCLTLQVNLLRKTGMVGVILLVLQWSYE 468
T+ ++L+++ L+++V L+K +VG+ L++ YE
Sbjct: 216 TLFLAVNLIDRFLSIKVVSLQKVQLVGLSALLIACKYE 253
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 355 TILAVLHLVEKCLTLQVNLLRKTGMVGVILLVLQWSYE 468
T+ ++++++ L+L+V L K +VG+ L + YE
Sbjct: 256 TLFLAVNIIDRFLSLRVCSLNKLQLVGIAALFIASKYE 293
>SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 186
Score = 25.8 bits (54), Expect = 4.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 276 YRNSSNTLLSSRGKLESRMQHW 211
Y +S+NTL++S G + S +W
Sbjct: 58 YADSNNTLITSSGVIPSNQTYW 79
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 25.4 bits (53), Expect = 6.0
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Frame = +3
Query: 174 SLKDKHVKGKESASAACETQVCRESLEECLKNFDKNVL----AEMRSVDL-RSLATIAAS 338
SLK ++ K+ A ++C+E E+CLK D+ + E R+ DL + L + S
Sbjct: 67 SLKKDNLFSKDGLLYAYY-ELCQEKFEKCLKEDDEEWIELWDLESRTWDLIQRLYSFRLS 125
Query: 339 SRR---SLNDFGGVTSCRKVSYTSS-ESFEKN------RNGWSDTPSVTVELRGKNTRFN 488
++ + F + Y+ + E+FE N R+ SD PS +E+RG +
Sbjct: 126 EQQGHIQSHAFSSRAVLEEEYYSQNPEAFENNIVFNWARDNSSDPPS--IEIRGNRWFYT 183
Query: 489 LSD 497
D
Sbjct: 184 RED 186
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 25.0 bits (52), Expect = 7.9
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +3
Query: 162 RKQNSLKDKHVKGKESASAACETQVCRE-SLEECLKNFDKNVLAEMRSVDLRSLATIAAS 338
R +N ++ + + S+A E + SLE L N + R + T AS
Sbjct: 380 RSENPMQKLQQQLQRLVSSAKERPKATQLSLEGALGKIAVNTVRTPRQLLNVKRPTEPAS 439
Query: 339 SRRSLNDFGGVTSCRKVSYTSSESFE 416
S SLN+F G ++ + V + + ++
Sbjct: 440 SNSSLNNFSGFSTKKDVLHAIEKVYD 465
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 25.0 bits (52), Expect = 7.9
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +3
Query: 318 LATIAASSRRSLNDFGGVTSCRKVSYTSSESFEKNRNGW 434
L ++ + ++ ND G + RK+ + E+ K+ +GW
Sbjct: 243 LTSLNSMVPKNANDLGDIRKARKLLQSVIETNPKHASGW 281
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 25.0 bits (52), Expect = 7.9
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Frame = +3
Query: 267 NFDK---NVLAEMRSVDLRSLATIAASSRRSLNDFG---GVTSCRKVSYTSSESFEKN-- 422
NFD N L ++L+ + +S+++ L+D G R V + N
Sbjct: 422 NFDSDSINRLYAEAQLELKQRDGVLSSTKQQLSDLMTALGDAQERYVELVKNHRVNSNLT 481
Query: 423 -RNGWSDTPSVTVELRGKNTRFNLS-DNFIRLL 515
N +D P T+E + KN N +NF++ L
Sbjct: 482 ANNSLNDKPGFTIEQKDKNFSINNERNNFLQKL 514
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,369
Number of Sequences: 5004
Number of extensions: 41350
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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