Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11i06
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    24   0.93 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           24   0.93 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.8  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   8.7  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 103 FWVFIEFNENMLH 65
           FW  I FNEN LH
Sbjct: 546 FWNSINFNENKLH 558


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 103 FWVFIEFNENMLH 65
           FW  I FNEN LH
Sbjct: 546 FWNSINFNENKLH 558


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 306 RHFASPLVHSYRNSSNTLLSSRGKLESRMQHWRFLSPSHVCLLSYF 169
           R+FAS   +    +   LL+S   +    +HW+F  P+ V +L  F
Sbjct: 834 RYFASIATNPKEQAQLNLLASDPAVYEDWRHWKF--PNLVEVLDEF 877


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 478 HDLTSPITLFAYYVKTQKVHSSTTF 552
           H LT+ ITL     +  K+H+  T+
Sbjct: 131 HMLTTTITLTLLAYQATKIHAVDTY 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,805
Number of Sequences: 438
Number of extensions: 2563
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)