Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11i01
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    40   3e-04
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   4.9  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    25   8.6  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   8.6  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   8.6  
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    25   8.6  

>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 19/41 (46%), Positives = 27/41 (65%)
 Frame = +2

Query: 470 AFNFMKALNIPKYSILGWSDGGITGIIHAAKYPETVQKLVI 592
           AF FMK   + K SI+G S G  T ++ A K+P+ V+KLV+
Sbjct: 77  AFQFMKDHKLDKASIIGHSMGAKTAMVTALKWPDKVEKLVV 117


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +1

Query: 106 KVTKKDFIETKNADNA*KCNFAYY-ELY*NVTCEMYVYGRSKGGES*SIWVQYKLCQSW 279
           K  +KDFI+ K+     K  F+YY E       E YV G         ++  Y+ CQSW
Sbjct: 487 KNVEKDFIQWKDDYYRSKVGFSYYDEEALKAMAERYVEGLQW-----VLFYYYRGCQSW 540


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 572 TVQKLVIWGSNSFMLP 619
           T++KL++WG N  ++P
Sbjct: 536 TLEKLLVWGDNHVLMP 551


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 296 LICLPGALGTIWTDYKPQIEG 358
           ++CLP  +G IW D  P + G
Sbjct: 608 VLCLPNIVGEIWVD-SPSLSG 627


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +2

Query: 209 MSTAVPKEEKVKVSGCNINYVKVGKGSHNLICLPGALGTIWTDYKPQIEGIDKNDFTL 382
           ++TA PK +++ + G   N  K  + +   +  P    +   DYK +I+GID N   L
Sbjct: 648 VNTAPPKVQEL-LKGTESNLRKNAQLAILKLFAPQLSSSTHFDYKLEIKGIDNNQVLL 704


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 392 DPPGYGKSRPPMKQFDVDFY 451
           +P GYG     +KQ+D+D Y
Sbjct: 213 EPLGYGLDMDQLKQYDLDAY 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,800
Number of Sequences: 5004
Number of extensions: 58920
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)